Reaction-diffusion in NEURON

Moderators: hines, wwlytton, ramcdougal

New Topic

42 topics • Page 1 of 1

Announcements

Replies

Views

Last post

Reaction-diffusion is included with NEURON 7.3

Last post by ted « Thu Apr 11, 2013 10:41 am

by ted » Thu Apr 11, 2013 10:41 am

0 Replies

6706 Views

Last post by ted
Thu Apr 11, 2013 10:41 am
Introduction and request for suggestions

Last post by Keivan « Thu Aug 08, 2013 10:48 am
Replies: 5
by wwlytton » Fri Feb 13, 2009 7:58 am

5 Replies

9762 Views

Last post by Keivan
Thu Aug 08, 2013 10:48 am

Topics

Replies

Views

Last post

NEURON 7.7.1 RxD issue

Last post by bremen « Mon Oct 07, 2019 2:52 pm
Replies: 2
by bremen » Thu Oct 03, 2019 8:45 am

2 Replies

108 Views

Last post by bremen
Mon Oct 07, 2019 2:52 pm
Using setpointer() and RXD concentrations

Last post by adamjhn « Tue Aug 27, 2019 11:48 am
Replies: 1
by amerg » Mon Aug 26, 2019 6:16 pm

1 Replies

297 Views

Last post by adamjhn
Tue Aug 27, 2019 11:48 am
Using include_flux() properly

Last post by adamjhn « Wed Aug 21, 2019 4:43 pm
Replies: 1
by amerg » Tue Aug 20, 2019 8:42 pm

1 Replies

345 Views

Last post by adamjhn
Wed Aug 21, 2019 4:43 pm
Parameter and MultiCompartmentReaction Error

Last post by adamjhn « Thu Aug 15, 2019 5:25 pm
Replies: 1
by amerg » Thu Aug 01, 2019 3:42 pm

1 Replies

308 Views

Last post by adamjhn
Thu Aug 15, 2019 5:25 pm
Modelling a channel with multiple markov states

Last post by SurG « Wed Aug 14, 2019 1:34 pm
Replies: 7
by SurG » Sun Jul 07, 2019 1:58 am

7 Replies

829 Views

Last post by SurG
Wed Aug 14, 2019 1:34 pm
decay reactions

Last post by adamjhn « Wed Aug 14, 2019 10:25 am
Replies: 1
by Tuoma » Wed Aug 14, 2019 5:14 am

1 Replies

237 Views

Last post by adamjhn
Wed Aug 14, 2019 10:25 am
Altering Total Concentration During a Simulation

Last post by Darshan « Sun Aug 04, 2019 1:07 pm
Replies: 2
by amerg » Thu Aug 01, 2019 3:09 pm

2 Replies

367 Views

Last post by Darshan
Sun Aug 04, 2019 1:07 pm
basic questions on RxD

Last post by adamjhn « Mon Jul 08, 2019 10:35 am
Replies: 7
by Tuoma » Tue Apr 24, 2018 10:10 am

7 Replies

2200 Views

Last post by adamjhn
Mon Jul 08, 2019 10:35 am
Questions about Calcium Waves in RxD

Last post by yuzhou « Tue May 07, 2019 8:55 pm
Replies: 2
by yuzhou » Fri May 03, 2019 10:35 am

2 Replies

792 Views

Last post by yuzhou
Tue May 07, 2019 8:55 pm
Reactions only when concentration above a certain limit?

Last post by adamjhn « Mon Mar 18, 2019 11:24 am
Replies: 1
by bremen » Sat Mar 16, 2019 12:06 pm

1 Replies

937 Views

Last post by adamjhn
Mon Mar 18, 2019 11:24 am
diffusion intracellular->extracellular->intracellular

Last post by bremen « Sun Mar 03, 2019 8:17 am
Replies: 7
by bremen » Thu Feb 07, 2019 11:25 am

7 Replies

1337 Views

Last post by bremen
Sun Mar 03, 2019 8:17 am
USEION in mod files for RxD species I created

Last post by ted « Fri Mar 01, 2019 5:52 pm
Replies: 3
by bschneiders » Fri Mar 01, 2019 9:48 am

3 Replies

771 Views

Last post by ted
Fri Mar 01, 2019 5:52 pm
RXD lower concentration limit?

Last post by RBJ « Mon Feb 18, 2019 5:13 pm
Replies: 2
by RBJ » Sat Feb 16, 2019 6:29 am

2 Replies

689 Views

Last post by RBJ
Mon Feb 18, 2019 5:13 pm
Unexpected 3D behaviour

Last post by RBJ « Mon Feb 04, 2019 4:19 pm
Replies: 2
by RBJ » Thu Jan 31, 2019 3:24 pm

2 Replies

846 Views

Last post by RBJ
Mon Feb 04, 2019 4:19 pm
3D Dimensional RXD/CRXD

Last post by RBJ « Thu Jan 31, 2019 2:59 pm
Replies: 4
by RBJ » Fri Jan 25, 2019 2:51 pm

4 Replies

1122 Views

Last post by RBJ
Thu Jan 31, 2019 2:59 pm
Different reaction rates in different sections

Last post by RBJ « Tue Jan 22, 2019 11:00 am
Replies: 3
by RBJ » Mon Jan 21, 2019 8:20 am

3 Replies

878 Views

Last post by RBJ
Tue Jan 22, 2019 11:00 am
updating Species and Rates inputs

Last post by bschneiders « Fri Jan 18, 2019 3:08 pm
Replies: 2
by bschneiders » Wed Jan 16, 2019 2:41 pm

2 Replies

725 Views

Last post by bschneiders
Fri Jan 18, 2019 3:08 pm
Reaction-Diffusion in HOC

Last post by Darshan « Sat Nov 17, 2018 2:28 am
Replies: 5
by ramcdougal » Fri Oct 27, 2017 10:09 am

5 Replies

17592 Views

Last post by Darshan
Sat Nov 17, 2018 2:28 am
maximum length for the name of a species?

Last post by Tuoma « Fri Nov 16, 2018 6:07 am
Replies: 2
by Tuoma » Wed Nov 14, 2018 10:59 am

2 Replies

1062 Views

Last post by Tuoma
Fri Nov 16, 2018 6:07 am
Add term to RxD solution.

Last post by ramcdougal « Fri Sep 14, 2018 10:59 am
Replies: 2
by ahmed.hamzah » Fri Sep 07, 2018 5:43 pm

2 Replies

1896 Views

Last post by ramcdougal
Fri Sep 14, 2018 10:59 am
RxD in Neuron

Last post by ahmed.hamzah « Mon Aug 27, 2018 7:55 pm
Replies: 3
by ahmed.hamzah » Fri Aug 24, 2018 5:08 pm

3 Replies

2029 Views

Last post by ahmed.hamzah
Mon Aug 27, 2018 7:55 pm
different results from NEURON version 7.5 and NEURON version 7.4

Last post by adamjhn « Mon Jul 23, 2018 3:38 pm
Replies: 1
by yz398 » Mon Jul 23, 2018 2:29 pm

1 Replies

1282 Views

Last post by adamjhn
Mon Jul 23, 2018 3:38 pm
Custom reaction rates

Last post by ramcdougal « Mon Jun 11, 2018 11:28 am
Replies: 1
by Tuoma » Mon Jun 11, 2018 11:25 am

1 Replies

1124 Views

Last post by ramcdougal
Mon Jun 11, 2018 11:28 am
Different species parameters for different regions

Last post by bschneiders « Thu Jun 07, 2018 6:02 pm
Replies: 7
by bschneiders » Thu Feb 15, 2018 1:18 pm

7 Replies

2738 Views

Last post by bschneiders
Thu Jun 07, 2018 6:02 pm
Negative concentrations

Last post by ramcdougal « Thu May 10, 2018 5:45 pm
Replies: 5
by Tuoma » Mon May 07, 2018 10:36 am

5 Replies

2053 Views

Last post by ramcdougal
Thu May 10, 2018 5:45 pm
Radial diffusion using RxD?

Last post by bschneiders « Thu Apr 12, 2018 12:46 pm
Replies: 2
by bschneiders » Tue Apr 10, 2018 12:33 pm

2 Replies

1578 Views

Last post by bschneiders
Thu Apr 12, 2018 12:46 pm
Is there a model that handles Signaling Pathways in rxd?

Last post by adamjhn « Thu Oct 05, 2017 6:21 pm
Replies: 1
by vogdb » Wed Sep 06, 2017 11:13 am

1 Replies

9113 Views

Last post by adamjhn
Thu Oct 05, 2017 6:21 pm
Reaction Not Proceeding

Last post by npatel « Tue Aug 01, 2017 8:42 am
Replies: 3
by npatel » Mon Jul 31, 2017 11:13 am

3 Replies

9346 Views

Last post by npatel
Tue Aug 01, 2017 8:42 am
Running pde solver more than once

Last post by ramcdougal « Wed Jun 21, 2017 12:33 pm
Replies: 4
by ren » Mon Jun 19, 2017 4:56 am

4 Replies

9876 Views

Last post by ramcdougal
Wed Jun 21, 2017 12:33 pm
Modeling extracellular space and a plasma membrane

Last post by ramcdougal « Wed Apr 26, 2017 3:10 pm
Replies: 3
by bschneiders » Tue Apr 04, 2017 5:34 pm

3 Replies

9619 Views

Last post by ramcdougal
Wed Apr 26, 2017 3:10 pm
Absolute tolerance scale in RxD

Last post by ramcdougal « Thu Apr 20, 2017 3:53 pm
Replies: 1
by bschneiders » Wed Apr 19, 2017 12:25 pm

1 Replies

8502 Views

Last post by ramcdougal
Thu Apr 20, 2017 3:53 pm
Basic modelling question

Last post by SurG « Thu Sep 08, 2016 5:49 am
Replies: 7
by stephanmg » Wed Jun 04, 2014 11:45 am

7 Replies

13159 Views

Last post by SurG
Thu Sep 08, 2016 5:49 am
Intracellular potassium depletion

Last post by yuzhou « Tue Sep 06, 2016 11:10 am
Replies: 2
by yuzhou » Sun Sep 04, 2016 12:26 am

2 Replies

9284 Views

Last post by yuzhou
Tue Sep 06, 2016 11:10 am
How to solve the calcium summation problem?

Last post by ylzang « Tue Jun 14, 2016 8:54 am
Replies: 5
by ylzang » Mon May 16, 2016 4:00 am

5 Replies

10047 Views

Last post by ylzang
Tue Jun 14, 2016 8:54 am
calcium diffusion in different shells

Last post by ted « Wed Jan 06, 2016 11:51 am
Replies: 8
by ylzang » Wed Dec 30, 2015 9:22 pm

8 Replies

7003 Views

Last post by ted
Wed Jan 06, 2016 11:51 am
New multiscale (molecular/net) neocortex model on ModelDB

Last post by samnemo « Fri Jan 01, 2016 11:31 am

by samnemo » Fri Jan 01, 2016 11:31 am

0 Replies

9227 Views

Last post by samnemo
Fri Jan 01, 2016 11:31 am
The dimension problem of the difusion

Last post by ted « Thu Jun 25, 2015 11:57 pm
Replies: 3
by ylzang » Thu Jun 11, 2015 8:39 pm

3 Replies

6221 Views

Last post by ted
Thu Jun 25, 2015 11:57 pm
New reaction-diffusion model on ModelDB

Last post by Darshan « Tue Apr 07, 2015 3:55 pm
Replies: 6
by samnemo » Thu Dec 18, 2014 1:23 pm

6 Replies

8446 Views

Last post by Darshan
Tue Apr 07, 2015 3:55 pm
Patch to geometry.py

Last post by ramcdougal « Wed Sep 24, 2014 2:44 pm
Replies: 3
by davidsterratt » Tue Sep 23, 2014 11:19 am

3 Replies

6719 Views

Last post by ramcdougal
Wed Sep 24, 2014 2:44 pm
Active Transport

Last post by ted « Mon Aug 25, 2014 11:50 am
Replies: 4
by ahwillia » Wed Aug 20, 2014 5:25 pm

4 Replies

7478 Views

Last post by ted
Mon Aug 25, 2014 11:50 am
Overriding _w_currents() in rxd.py

Last post by davidsterratt « Sun Jul 13, 2014 4:59 pm
Replies: 4
by davidsterratt » Tue Jul 08, 2014 11:43 am

4 Replies

7349 Views

Last post by davidsterratt
Sun Jul 13, 2014 4:59 pm
nseg odd?

Last post by ted « Wed Dec 16, 2009 2:24 am
Replies: 9
by gartland » Sat Dec 05, 2009 2:00 am

9 Replies

10632 Views

Last post by ted
Wed Dec 16, 2009 2:24 am

New Topic

42 topics • Page 1 of 1

Return to Board Index

Forum permissions

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum