www.neuron.yale.edu

I realized I omitted the vital line: graphlist[0].append(graph5). With its inclusion I now have a new graph created upon each trial and each new graph plots the voltage trace. However, each graph respawns the previous voltage trace as each new trial is automatically run. Is there a way to essentiall...

The axis are scaled correctly and using "view = plot" does not reveal anything new. On a separate graph I can visualize the voltage traces as the simulations run, though each voltage trace is overwritten at the beginning of a new simulation. However, no traces appear on the graph's created...

Thanks Ted, however now I am returned multiple graph windows as the simulations complete but no voltage trace is plotted on any of the graphs. My code for myrun is as follows: proc myrun() { graph5 = new Graph() graph5.addvar("Cell[0].soma.v(0.5)", 3,1,0.8,0.9,2) glist.append(graph5) run() }

Hello, I am also trying to automate multiple simulations. I am examining a single bursting cell and varying a maximal conductance with each automated simulation. Though I have the automated process to vary the conductance and repeatedly run the simulation down correctly I have not figured out how to...

Hello, I have checked through my code and implemented your more efficient spike time capture method successfully. However, I still get the same bad_alloc error when, and only when, I include code for creating cumulative spike histograms in long simulations. I am able to run both long simulations whi...

Additionally, I have tried the error checking and when I run -dll with the path to special and init.hoc I am first told, in regards to the path to special, " invalid ELF header" and then the program runs until it errors attempting to insert a mod file which had already been complied and st...

Here is my code for creating raster and cumulative histogram plots: objref netcon, vec, spikes, nil, graster objref vecs1[100], gg1, yy1 proc preprasterplot1() { spikes = new List() for i=0, hgcells.count()-1 { vecs1[i] = new Vector(0) vec = new Vector () hgcells.object(i).soma netcon = new NetCon(&...

Hello, I'm having trouble outputting long strings of data from NEURON. I have been using the simulator to create raster plotz and cumulative histogram plots of cell populations and then using Vector: Save to File to selecting the histogram trace to output. This works well as long as my simulation tr...

You were right Raj, I was putting my variable for strSeed in quotes within sscanf cause the errors. Thanks for your input

What is the file type of "intSeed". I'm getting errors that it is not a double pointer but if i declare intSeed as a double NEURON gets stuck in a segmentation violation error loop. Thanks,

I have been trying to use sscanf for this same task to convert the system date/time string to a number for seeding but I've been unsuccessful due to my ignorance of the formats used for sscanf. Every format I've tried listed in the programmers references returns an error of incorrect argument type. ...

Hello, I'm attempting to create code for a cumulative frequency spike plot for a population of 25 neurons similar to that which is included in the spikeplot feature of Network Builder. I've had success writing hoc to create raster plots for networks not created with the GUI but I'm having little luc...

Hello, In modeling a network of cells with Network Builder I've noticed spikes are only recorded in SpikePlot when they have crossed a threshold of about +10 mV. Is there a way to change this threshold for SpikePlot? Additionally is there a way to change this threshold for individual cells/ cell typ...

The paper is: Purvis, L. Butera, R. Ionic Current Model of a Hypoglossal Motoneuron. J Neurophysiol 93. 723-733, 2005.

Their calcium accumulation mechanism is similar to that I originally posted on in this thread.

Thanks Ted. I now see noticeable fluctuation in Isk with a 1 ms /1 nA current pulse. However the magnitude of the peak is much lower 0.04 mA compared to 1 mA in the paper I'm working from. The calcium current also peak at a lower magnitude than expected (~ -1mA compared to -2.5 mA) I believe this is...