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Hello NEURON community: This post talks about the underlying equation of AlphaSynapse. https://www.sas.upenn.edu/LabManuals/BBB251/NIA/NEUROLAB/HELP/alphasyn.htm I am wondering if the "v", postsynaptic voltage, is constant (and set as resting voltage) or should change during current inject...

Actually, I ignored the PlotShape function and ran the ring network tutorial and suddenly everything worked out fine. I don't know what happened, but it is worth a try.

doesn't produce an error message for me. You may have discovered a bug. We'll look into this further. It seems to be a pointer related issue in C/C++ of NEURON package and there is no way users can debug on python wrapper. Is it possible for you to write a python version of PlotShape function and u...

And I was able to implement this tutorial's code with the final plotting:
https://nrn.readthedocs.io/en/8.2.4/tut ... asics.html
So I assume the problem is not my system not displaying graph or matplotlib malfunctional.

I know my Ubuntu can show plots. In the first post, I used import matplotlib matplotlib.use('QT5Agg') For my code to display plot. I was asking if your alternative method need anything like this. If not, the alternative code you suggested also does not work for me. Sorry for the confusion. There is ...

Hi Ted: I tried, here is the code from neuron import h from neuron.units import ms, mV, µm h.load_file("stdrun.hoc") import plotly class BallAndStick: def __init__ (self, gid): self._gid = gid # identifier gid self.soma = h.Section(name="soma", cell=self) self.dend = h.Section(na...

Hi NEURON community: I am experiencing issues with h.PlotShape. Following the tutorial https://nrn.readthedocs.io/en/8.2.4/tutorials/ball-and-stick-1.html I wrote this code on Ubuntu 22.04 python 3.10.12 and NEURON 8.2.4 (in a virtual environment): from neuron import h from neuron.units import ms, m...