I must also highlight a key difference between the earlier and new versions of the models.
The earlier parallelized HOC model (that I used to simulate on the cluster as well) used APCount().
While porting the model to Python I have used h.NetCon instead, for spike detection.
Regards,
Nil
Search found 5 matches
- Mon Oct 16, 2023 1:16 pm
- Forum: NEURON + Python
- Topic: h.parallelContext in a model being simulated on a cluster
- Replies: 3
- Views: 36843
- Mon Oct 16, 2023 12:59 pm
- Forum: NEURON + Python
- Topic: h.parallelContext in a model being simulated on a cluster
- Replies: 3
- Views: 36843
Re: h.parallelContext in a model being simulated on a cluster
Thank you for replying, Ted.
On my Mac I have: NEURON -- VERSION 8.2.0 HEAD (156b9dee3) 2022-07-01
On the cluster: NEURON -- VERSION 8.0.2 HEAD (f0ca7454) 2022-02-02
Regards,
Nil
On my Mac I have: NEURON -- VERSION 8.2.0 HEAD (156b9dee3) 2022-07-01
On the cluster: NEURON -- VERSION 8.0.2 HEAD (f0ca7454) 2022-02-02
Regards,
Nil
- Mon Oct 16, 2023 1:10 am
- Forum: NEURON + Python
- Topic: h.parallelContext in a model being simulated on a cluster
- Replies: 3
- Views: 36843
h.parallelContext in a model being simulated on a cluster
I am porting an old model implemented in HOC to Python. The model is that of a pyramidal neuron which has a soma, dendritic arbor along with myelinated axon and collaterals. The key idea is to elicit spikes in the soma and observe their propagation along the axon and collaterals. I am trying to para...
- Sat Oct 26, 2013 5:39 am
- Forum: Adding new mechanisms and functions to NEURON
- Topic: Intercellular Calcium Signalling
- Replies: 2
- Views: 2650
Re: Intercellular Calcium Signalling
Hi Ted,
I have mailed as suggested by you.
Regards,
Nilapratim
I have mailed as suggested by you.
Regards,
Nilapratim
- Thu Oct 24, 2013 6:52 am
- Forum: Adding new mechanisms and functions to NEURON
- Topic: Intercellular Calcium Signalling
- Replies: 2
- Views: 2650
Intercellular Calcium Signalling
Hi All, I wish to implement intercellular calcium signalling in a network of cells. I was unable to find any lead on this aspect in the NEURON Forum. As I conceptualize, it would require the variation of Calcium-concentration in one cell to be made available to another cell after every time-step. Si...