I am using a L23 pyramidal neuron from the HBP cortical microcircuit, Aberra et al 2018 https://senselab.med.yale.edu/ModelDB/S ... del=241165. I replace the morphology of a L23 cortical cell with my own morphology, but I preserve mechnanisms and synapse distribution from the HBP. If the morphology is in neurolucida (asc) format I can load the cell succesfully and insert mechanisms and synapses. If instead the morphology is given in swc format, I can still load the cell successfully, insert mechanisms but I cannot insert synapses. I get the following error. I attach part of my swc file and part of the synapse file (tsv) from HBP. Any guidance on this error would help very much.
thank you,
Alexandra
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1
1
Starting to add synapses
/usr/local/lib/python3.9/site-packages/neuron/.data/bin//nrniv: EOF in fscan
in init.hoc near line 49
}
^
Matrix[0].scanf(File[0]) // File[0] is the synapse file given in "tsv" format
synapses_c2e79db05a[0].load_synapses(cADpyr229_L23_PC_c2e79db05a[0]) // cADpyr229_L23_PC_c2e79db05a is the swc morphology file
cADpyr229_L23_PC_c2e79db05a[0].load_synapses()
cADpyr229_L23_PC_c2e79db05a[0].init(1)
and others
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