NEURON design

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NEURON + Python
When Python is the interpreter, what is a good
design for the interface to the basic NEURON
concepts.
Moderator: hines
Topics: 306

306 Topics

1605 Posts

Last post Re: Manual Installation of NE…
by ted View the latest post
Wed Jun 20, 2018 10:35 am
Reaction-diffusion in NEURON
Extending NEURON to handle reaction-diffusion problems.
Moderators: hines, wwlytton, ramcdougal
Topics: 24

24 Topics

108 Posts

Last post Re: Custom reaction rates
by ramcdougal View the latest post
Mon Jun 11, 2018 11:28 am

Active topics

Replies

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Last post

Use NEURON's native GUI tools with Python!

Last post by Mohamed_Hisham « Wed Aug 09, 2017 5:57 pm
Replies: 1
by ted » Tue Aug 08, 2017 2:48 pm

1 Replies

8339 Views

Last post by Mohamed_Hisham
Wed Aug 09, 2017 5:57 pm
More NEURON + Python documentation

Last post by romain.caze « Tue Jun 30, 2015 3:54 am
Replies: 4
by ted » Mon Mar 24, 2008 10:17 am

4 Replies

18425 Views

Last post by romain.caze
Tue Jun 30, 2015 3:54 am
More NEURON + Python resources

Last post by wjbeaver « Wed Dec 22, 2010 4:38 pm
Replies: 4
by mctavish » Wed Dec 01, 2010 3:13 pm

4 Replies

12339 Views

Last post by wjbeaver
Wed Dec 22, 2010 4:38 pm
Manual Installation of NEURON Python module on Linux Mint 18

Last post by ted « Wed Jun 20, 2018 10:35 am
Replies: 7
by Darth_Malloc » Fri Jun 15, 2018 11:54 am

7 Replies

175 Views

Last post by ted
Wed Jun 20, 2018 10:35 am
Neuron code

Last post by ahmed.hamzah « Wed Jun 13, 2018 3:20 pm
Replies: 20
by ahmed.hamzah » Thu Jun 07, 2018 8:29 pm
1

2
20 Replies

328 Views

Last post by ahmed.hamzah
Wed Jun 13, 2018 3:20 pm
Custom reaction rates

Last post by ramcdougal « Mon Jun 11, 2018 11:28 am
Replies: 1
by Tuoma » Mon Jun 11, 2018 11:25 am

1 Replies

85 Views

Last post by ramcdougal
Mon Jun 11, 2018 11:28 am
Different species parameters for different regions

Last post by bschneiders « Thu Jun 07, 2018 6:02 pm
Replies: 7
by bschneiders » Thu Feb 15, 2018 1:18 pm

7 Replies

437 Views

Last post by bschneiders
Thu Jun 07, 2018 6:02 pm
Best way(s) to advance() in Python

Last post by ted « Mon May 28, 2018 9:22 pm
Replies: 3
by tommct » Fri May 25, 2018 11:39 am

3 Replies

155 Views

Last post by ted
Mon May 28, 2018 9:22 pm
Python NEURON

Last post by hines « Fri May 25, 2018 1:16 am
Replies: 15
by FariaVS » Sat Apr 01, 2017 1:28 pm
1

2
15 Replies

11185 Views

Last post by hines
Fri May 25, 2018 1:16 am
Negative concentrations

Last post by ramcdougal « Thu May 10, 2018 5:45 pm
Replies: 5
by Tuoma » Mon May 07, 2018 10:36 am

5 Replies

194 Views

Last post by ramcdougal
Thu May 10, 2018 5:45 pm
gui not accessible and graphs not updating while running simulations from Python

Last post by ramcdougal « Mon May 07, 2018 12:51 pm
Replies: 8
by claudioez » Tue Apr 17, 2018 9:42 am

8 Replies

331 Views

Last post by ramcdougal
Mon May 07, 2018 12:51 pm
basic questions on RxD

Last post by ramcdougal « Tue Apr 24, 2018 10:53 am
Replies: 1
by Tuoma » Tue Apr 24, 2018 10:10 am

1 Replies

165 Views

Last post by ramcdougal
Tue Apr 24, 2018 10:53 am
Radial diffusion using RxD?

Last post by bschneiders « Thu Apr 12, 2018 12:46 pm
Replies: 2
by bschneiders » Tue Apr 10, 2018 12:33 pm

2 Replies

163 Views

Last post by bschneiders
Thu Apr 12, 2018 12:46 pm
Recording Currents & Current Stimulation

Last post by yiliu021 « Tue Apr 10, 2018 5:33 pm
Replies: 12
by yiliu021 » Tue Apr 03, 2018 5:40 pm

12 Replies

373 Views

Last post by yiliu021
Tue Apr 10, 2018 5:33 pm
Cannot get Vector.play() and NetCon/NetStim work with CVODE and SaveState.restore()

Last post by hines « Tue Apr 10, 2018 4:47 am
Replies: 4
by JustasB » Fri Apr 06, 2018 7:41 pm

4 Replies

227 Views

Last post by hines
Tue Apr 10, 2018 4:47 am
Truncation of floats upon loading .hoc file from ipython

Last post by hines « Wed Mar 28, 2018 4:18 pm
Replies: 15
by mbesserve » Mon Mar 19, 2018 10:19 am
1

2
15 Replies

444 Views

Last post by hines
Wed Mar 28, 2018 4:18 pm
Accessing neuron vectors stored in a python list

Last post by ramcdougal « Fri Mar 23, 2018 1:56 pm
Replies: 3
by ryang » Thu Mar 22, 2018 7:44 pm

3 Replies

152 Views

Last post by ramcdougal
Fri Mar 23, 2018 1:56 pm
pdb.set_trace() gives Segmentation Fault

Last post by ramcdougal « Mon Mar 12, 2018 6:04 pm
Replies: 1
by homerobse » Mon Mar 12, 2018 1:04 pm

1 Replies

218 Views

Last post by ramcdougal
Mon Mar 12, 2018 6:04 pm
Connect multiple cells using connection probabilities

Last post by ekkya « Sat Mar 03, 2018 10:15 am

by ekkya » Sat Mar 03, 2018 10:15 am

0 Replies

161 Views

Last post by ekkya
Sat Mar 03, 2018 10:15 am
Accessing extracellular mechanism variables from Python

Last post by ted « Fri Feb 16, 2018 9:30 am
Replies: 12
by ksarma » Wed Jul 16, 2008 4:35 pm

12 Replies

3554 Views

Last post by ted
Fri Feb 16, 2018 9:30 am
Updating extracellular values for all segments!

Last post by edaneshi « Tue Feb 13, 2018 3:01 am
Replies: 7
by edaneshi » Sat Feb 10, 2018 6:52 pm

7 Replies

410 Views

Last post by edaneshi
Tue Feb 13, 2018 3:01 am
xpanel between python and hoc

Last post by ted « Sun Feb 04, 2018 10:29 pm
Replies: 3
by bschneiders » Wed Jan 24, 2018 12:34 pm

3 Replies

270 Views

Last post by ted
Sun Feb 04, 2018 10:29 pm
Need Help Locating File + NEURON not reflecting changes

Last post by GA_ScottRac « Thu Feb 01, 2018 1:20 am
Replies: 4
by GA_ScottRac » Tue Jan 30, 2018 3:56 pm

4 Replies

240 Views

Last post by GA_ScottRac
Thu Feb 01, 2018 1:20 am
Creating NetCon with null source in NEURON+Python

Last post by ted « Sun Dec 31, 2017 12:16 pm
Replies: 10
by pascal » Wed Feb 01, 2017 9:52 am

10 Replies

10351 Views

Last post by ted
Sun Dec 31, 2017 12:16 pm
Some problem about Python+NEURON on a server with multiple Python

Last post by zyc « Sun Nov 26, 2017 2:37 am

by zyc » Sun Nov 26, 2017 2:37 am

0 Replies

5608 Views

Last post by zyc
Sun Nov 26, 2017 2:37 am
Finding Neuron install prefix from Python

Last post by tclose « Tue Nov 14, 2017 6:30 pm
Replies: 2
by tclose » Tue Nov 14, 2017 4:19 am

2 Replies

9974 Views

Last post by tclose
Tue Nov 14, 2017 6:30 pm
Reaction-Diffusion in HOC

Last post by ramcdougal « Fri Oct 27, 2017 10:09 am

by ramcdougal » Fri Oct 27, 2017 10:09 am

0 Replies

15001 Views

Last post by ramcdougal
Fri Oct 27, 2017 10:09 am
Is there a model that handles Signaling Pathways in rxd?

Last post by adamjhn « Thu Oct 05, 2017 6:21 pm
Replies: 1
by vogdb » Wed Sep 06, 2017 11:13 am

1 Replies

7675 Views

Last post by adamjhn
Thu Oct 05, 2017 6:21 pm
differences between python2 and python3

Last post by cstricker « Sat Sep 09, 2017 8:41 pm

by cstricker » Sat Sep 09, 2017 8:41 pm

0 Replies

13482 Views

Last post by cstricker
Sat Sep 09, 2017 8:41 pm
Simultaneous equations in python

Last post by ted « Thu Aug 31, 2017 9:22 am
Replies: 4
by catharina » Wed Aug 30, 2017 5:53 am

4 Replies

8712 Views

Last post by ted
Thu Aug 31, 2017 9:22 am
problems with import mod mechanism with python

Last post by menica « Thu Aug 17, 2017 2:38 pm
Replies: 13
by menica » Wed Aug 02, 2017 7:34 am

13 Replies

9988 Views

Last post by menica
Thu Aug 17, 2017 2:38 pm
Memory problem

Last post by ted « Thu Aug 03, 2017 5:33 pm
Replies: 3
by lb5999 » Thu Aug 03, 2017 7:52 am

3 Replies

8414 Views

Last post by ted
Thu Aug 03, 2017 5:33 pm
Reaction Not Proceeding

Last post by npatel « Tue Aug 01, 2017 8:42 am
Replies: 3
by npatel » Mon Jul 31, 2017 11:13 am

3 Replies

7523 Views

Last post by npatel
Tue Aug 01, 2017 8:42 am
Problem about NEURON+Python, using hoc file

Last post by yax317 « Tue Jul 25, 2017 1:34 pm
Replies: 2
by yax317 » Mon Jul 24, 2017 9:39 am

2 Replies

8258 Views

Last post by yax317
Tue Jul 25, 2017 1:34 pm
Any simple way to identify parent segment of point porcess

Last post by rth « Thu Jul 13, 2017 1:43 am
Replies: 8
by rth » Mon Jul 10, 2017 7:30 pm

8 Replies

8995 Views

Last post by rth
Thu Jul 13, 2017 1:43 am
Section of source for h. NetCon() in Python

Last post by catharina « Tue Jul 11, 2017 6:23 am
Replies: 2
by catharina » Mon Jul 10, 2017 11:52 am

2 Replies

8319 Views

Last post by catharina
Tue Jul 11, 2017 6:23 am
DIfferent results with Neuron + Python and with HOC

Last post by ted « Thu Jul 06, 2017 10:51 am
Replies: 3
by Feanor » Mon Jun 26, 2017 12:11 pm

3 Replies

8495 Views

Last post by ted
Thu Jul 06, 2017 10:51 am
nseg not a USEPROPERTY

Last post by hines « Tue Jul 04, 2017 2:53 pm
Replies: 8
by merkdeturk » Thu Jun 22, 2017 4:38 am

8 Replies

9391 Views

Last post by hines
Tue Jul 04, 2017 2:53 pm
Running pde solver more than once

Last post by ramcdougal « Wed Jun 21, 2017 12:33 pm
Replies: 4
by ren » Mon Jun 19, 2017 4:56 am

4 Replies

8387 Views

Last post by ramcdougal
Wed Jun 21, 2017 12:33 pm
Gradual change of synaptic weights for mimicking neuromod...

Last post by rth « Tue Jun 20, 2017 3:17 pm
Replies: 2
by rth » Mon Jun 12, 2017 11:49 pm

2 Replies

8653 Views

Last post by rth
Tue Jun 20, 2017 3:17 pm
uninsert python

Last post by ngreiner « Fri Jun 09, 2017 7:35 am
Replies: 6
by oren » Sun Jul 05, 2015 9:40 am

6 Replies

9106 Views

Last post by ngreiner
Fri Jun 09, 2017 7:35 am
Neuron module recognized only in Terminal

Last post by ted « Sat May 27, 2017 1:18 pm
Replies: 1
by Qonrad » Fri May 26, 2017 7:09 pm

1 Replies

7949 Views

Last post by ted
Sat May 27, 2017 1:18 pm
h.fadvance() stops python threading, why?

Last post by rth « Thu May 11, 2017 7:17 pm
Replies: 2
by rth » Tue May 09, 2017 4:35 pm

2 Replies

8484 Views

Last post by rth
Thu May 11, 2017 7:17 pm
How to create hoc_func_table in NEURON + Python

Last post by hines « Tue May 02, 2017 8:28 pm
Replies: 1
by bwjmbb17 » Tue May 02, 2017 1:06 pm

1 Replies

8136 Views

Last post by hines
Tue May 02, 2017 8:28 pm
Modeling extracellular space and a plasma membrane

Last post by ramcdougal « Wed Apr 26, 2017 3:10 pm
Replies: 3
by bschneiders » Tue Apr 04, 2017 5:34 pm

3 Replies

8140 Views

Last post by ramcdougal
Wed Apr 26, 2017 3:10 pm
Disable NEURON GUI

Last post by ted « Fri Apr 21, 2017 5:14 pm
Replies: 3
by viniciuslima » Thu Apr 13, 2017 10:52 am

3 Replies

8583 Views

Last post by ted
Fri Apr 21, 2017 5:14 pm
Absolute tolerance scale in RxD

Last post by ramcdougal « Thu Apr 20, 2017 3:53 pm
Replies: 1
by bschneiders » Wed Apr 19, 2017 12:25 pm

1 Replies

7557 Views

Last post by ramcdougal
Thu Apr 20, 2017 3:53 pm
Some errors when I run ringtest.py

Last post by ted « Wed Apr 12, 2017 1:54 pm
Replies: 5
by zyc » Tue Apr 11, 2017 3:43 am

5 Replies

8766 Views

Last post by ted
Wed Apr 12, 2017 1:54 pm
Modifying v_init

Last post by bschneiders « Fri Mar 10, 2017 11:02 am
Replies: 2
by bschneiders » Thu Mar 09, 2017 5:04 pm

2 Replies

8750 Views

Last post by bschneiders
Fri Mar 10, 2017 11:02 am
Iterating over just the sections within an object

Last post by pascal « Wed Mar 08, 2017 11:46 am
Replies: 4
by pascal » Fri Mar 03, 2017 10:58 am

4 Replies

8667 Views

Last post by pascal
Wed Mar 08, 2017 11:46 am

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