NEURON design

Forum

Topics

Posts

Last post

NEURON + Python
When Python is the interpreter, what is a good
design for the interface to the basic NEURON
concepts.
Moderator: hines
Topics: 318

318 Topics

1658 Posts

Last post Re: How can python read from …
by ted View the latest post
Thu Jan 10, 2019 5:12 pm
Reaction-diffusion in NEURON
Extending NEURON to handle reaction-diffusion problems.
Moderators: hines, wwlytton, ramcdougal
Topics: 29

29 Topics

127 Posts

Last post Re: updating Species and Rate…
by adamjhn View the latest post
Thu Jan 17, 2019 2:50 pm

Active topics

Replies

Views

Last post

More NEURON + Python documentation

Last post by ramcdougal « Wed Oct 24, 2018 7:07 am
Replies: 6
by ted » Mon Mar 24, 2008 10:17 am

6 Replies

20149 Views

Last post by ramcdougal
Wed Oct 24, 2018 7:07 am
Use NEURON's native GUI tools with Python!

Last post by Mohamed_Hisham « Wed Aug 09, 2017 5:57 pm
Replies: 1
by ted » Tue Aug 08, 2017 2:48 pm

1 Replies

9300 Views

Last post by Mohamed_Hisham
Wed Aug 09, 2017 5:57 pm
More NEURON + Python resources

Last post by wjbeaver « Wed Dec 22, 2010 4:38 pm
Replies: 4
by mctavish » Wed Dec 01, 2010 3:13 pm

4 Replies

13382 Views

Last post by wjbeaver
Wed Dec 22, 2010 4:38 pm
updating Species and Rates inputs

Last post by adamjhn « Thu Jan 17, 2019 2:50 pm
Replies: 1
by bschneiders » Wed Jan 16, 2019 2:41 pm

1 Replies

14 Views

Last post by adamjhn
Thu Jan 17, 2019 2:50 pm
How can python read from a hoc file templates and procs?

Last post by ted « Thu Jan 10, 2019 5:12 pm
Replies: 7
by alexandrapierri » Fri Dec 21, 2018 6:01 pm

7 Replies

156 Views

Last post by ted
Thu Jan 10, 2019 5:12 pm
Compling Problem

Last post by hines « Sat Dec 22, 2018 1:10 pm
Replies: 21
by neurite » Thu Jun 28, 2007 5:04 pm
1

2
21 Replies

11983 Views

Last post by hines
Sat Dec 22, 2018 1:10 pm
Strange NEURON behavior with multithreading

Last post by rth « Tue Dec 11, 2018 11:53 am

by rth » Tue Dec 11, 2018 11:53 am

0 Replies

115 Views

Last post by rth
Tue Dec 11, 2018 11:53 am
Error running NEURON with embedded Python

Last post by ttarnaud « Fri Dec 07, 2018 10:56 am

by ttarnaud » Fri Dec 07, 2018 10:56 am

0 Replies

82 Views

Last post by ttarnaud
Fri Dec 07, 2018 10:56 am
Using VecStim() with CVode on

Last post by ted « Tue Dec 04, 2018 10:59 am
Replies: 3
by MarkoF » Tue Dec 04, 2018 6:20 am

3 Replies

97 Views

Last post by ted
Tue Dec 04, 2018 10:59 am
Nested for loops over SectionList objects

Last post by selfdestructo « Fri Nov 30, 2018 8:59 am
Replies: 5
by selfdestructo » Tue Nov 27, 2018 8:00 am

5 Replies

155 Views

Last post by selfdestructo
Fri Nov 30, 2018 8:59 am
Accessing inf_hh and tau_hh in the hh mechanism

Last post by yiliu021 « Tue Nov 27, 2018 1:41 pm
Replies: 6
by yiliu021 » Mon Nov 26, 2018 2:48 pm

6 Replies

140 Views

Last post by yiliu021
Tue Nov 27, 2018 1:41 pm
Reaction-Diffusion in HOC

Last post by Darshan « Sat Nov 17, 2018 2:28 am
Replies: 5
by ramcdougal » Fri Oct 27, 2017 10:09 am

5 Replies

16171 Views

Last post by Darshan
Sat Nov 17, 2018 2:28 am
maximum length for the name of a species?

Last post by Tuoma « Fri Nov 16, 2018 6:07 am
Replies: 2
by Tuoma » Wed Nov 14, 2018 10:59 am

2 Replies

234 Views

Last post by Tuoma
Fri Nov 16, 2018 6:07 am
undefined symbol: nrnmpi_myid

Last post by ted « Tue Sep 18, 2018 4:30 pm
Replies: 3
by aeronlaffere » Tue Sep 18, 2018 12:34 pm

3 Replies

933 Views

Last post by ted
Tue Sep 18, 2018 4:30 pm
Add term to RxD solution.

Last post by ramcdougal « Fri Sep 14, 2018 10:59 am
Replies: 2
by ahmed.hamzah » Fri Sep 07, 2018 5:43 pm

2 Replies

1003 Views

Last post by ramcdougal
Fri Sep 14, 2018 10:59 am
Error in bash.exe

Last post by ted « Tue Sep 04, 2018 9:34 am
Replies: 1
by ahmed.hamzah » Fri Aug 31, 2018 2:55 pm

1 Replies

764 Views

Last post by ted
Tue Sep 04, 2018 9:34 am
unload mechanisms dll

Last post by ted « Tue Sep 04, 2018 9:16 am
Replies: 1
by a.negrean » Thu Aug 30, 2018 11:06 am

1 Replies

714 Views

Last post by ted
Tue Sep 04, 2018 9:16 am
How to Configure System Variables

Last post by ted « Tue Sep 04, 2018 9:15 am
Replies: 1
by ahmed.hamzah » Tue Aug 28, 2018 3:26 pm

1 Replies

697 Views

Last post by ted
Tue Sep 04, 2018 9:15 am
RxD in Neuron

Last post by ahmed.hamzah « Mon Aug 27, 2018 7:55 pm
Replies: 3
by ahmed.hamzah » Fri Aug 24, 2018 5:08 pm

3 Replies

854 Views

Last post by ahmed.hamzah
Mon Aug 27, 2018 7:55 pm
Not able to run simulation more than once from a NEURON+Python script

Last post by MarkoF « Wed Aug 22, 2018 10:47 am
Replies: 4
by MarkoF » Tue Aug 21, 2018 11:58 am

4 Replies

954 Views

Last post by MarkoF
Wed Aug 22, 2018 10:47 am
Animation of synapse activation

Last post by rlindroos « Wed Aug 22, 2018 2:17 am
Replies: 4
by rlindroos » Fri Aug 17, 2018 7:31 am

4 Replies

1081 Views

Last post by rlindroos
Wed Aug 22, 2018 2:17 am
Neuron 7.5 + Python 3.7

Last post by Dradeliomecus « Tue Aug 07, 2018 9:28 am
Replies: 2
by Dradeliomecus » Tue Aug 07, 2018 4:06 am

2 Replies

1771 Views

Last post by Dradeliomecus
Tue Aug 07, 2018 9:28 am
different results from NEURON version 7.5 and NEURON version 7.4

Last post by adamjhn « Mon Jul 23, 2018 3:38 pm
Replies: 1
by yz398 » Mon Jul 23, 2018 2:29 pm

1 Replies

525 Views

Last post by adamjhn
Mon Jul 23, 2018 3:38 pm
Manual Installation of NEURON Python module on Linux Mint 18

Last post by ted « Wed Jun 20, 2018 10:35 am
Replies: 7
by Darth_Malloc » Fri Jun 15, 2018 11:54 am

7 Replies

1391 Views

Last post by ted
Wed Jun 20, 2018 10:35 am
Neuron code

Last post by ahmed.hamzah « Wed Jun 13, 2018 3:20 pm
Replies: 20
by ahmed.hamzah » Thu Jun 07, 2018 8:29 pm
1

2
20 Replies

2459 Views

Last post by ahmed.hamzah
Wed Jun 13, 2018 3:20 pm
Custom reaction rates

Last post by ramcdougal « Mon Jun 11, 2018 11:28 am
Replies: 1
by Tuoma » Mon Jun 11, 2018 11:25 am

1 Replies

459 Views

Last post by ramcdougal
Mon Jun 11, 2018 11:28 am
Different species parameters for different regions

Last post by bschneiders « Thu Jun 07, 2018 6:02 pm
Replies: 7
by bschneiders » Thu Feb 15, 2018 1:18 pm

7 Replies

1294 Views

Last post by bschneiders
Thu Jun 07, 2018 6:02 pm
Best way(s) to advance() in Python

Last post by ted « Mon May 28, 2018 9:22 pm
Replies: 3
by tommct » Fri May 25, 2018 11:39 am

3 Replies

633 Views

Last post by ted
Mon May 28, 2018 9:22 pm
Python NEURON

Last post by hines « Fri May 25, 2018 1:16 am
Replies: 15
by FariaVS » Sat Apr 01, 2017 1:28 pm
1

2
15 Replies

13161 Views

Last post by hines
Fri May 25, 2018 1:16 am
Negative concentrations

Last post by ramcdougal « Thu May 10, 2018 5:45 pm
Replies: 5
by Tuoma » Mon May 07, 2018 10:36 am

5 Replies

789 Views

Last post by ramcdougal
Thu May 10, 2018 5:45 pm
gui not accessible and graphs not updating while running simulations from Python

Last post by ramcdougal « Mon May 07, 2018 12:51 pm
Replies: 8
by claudioez » Tue Apr 17, 2018 9:42 am

8 Replies

771 Views

Last post by ramcdougal
Mon May 07, 2018 12:51 pm
basic questions on RxD

Last post by ramcdougal « Tue Apr 24, 2018 10:53 am
Replies: 1
by Tuoma » Tue Apr 24, 2018 10:10 am

1 Replies

726 Views

Last post by ramcdougal
Tue Apr 24, 2018 10:53 am
Radial diffusion using RxD?

Last post by bschneiders « Thu Apr 12, 2018 12:46 pm
Replies: 2
by bschneiders » Tue Apr 10, 2018 12:33 pm

2 Replies

703 Views

Last post by bschneiders
Thu Apr 12, 2018 12:46 pm
Recording Currents & Current Stimulation

Last post by yiliu021 « Tue Apr 10, 2018 5:33 pm
Replies: 12
by yiliu021 » Tue Apr 03, 2018 5:40 pm

12 Replies

1366 Views

Last post by yiliu021
Tue Apr 10, 2018 5:33 pm
Cannot get Vector.play() and NetCon/NetStim work with CVODE and SaveState.restore()

Last post by hines « Tue Apr 10, 2018 4:47 am
Replies: 4
by JustasB » Fri Apr 06, 2018 7:41 pm

4 Replies

833 Views

Last post by hines
Tue Apr 10, 2018 4:47 am
Truncation of floats upon loading .hoc file from ipython

Last post by hines « Wed Mar 28, 2018 4:18 pm
Replies: 15
by mbesserve » Mon Mar 19, 2018 10:19 am
1

2
15 Replies

1632 Views

Last post by hines
Wed Mar 28, 2018 4:18 pm
Accessing neuron vectors stored in a python list

Last post by ramcdougal « Fri Mar 23, 2018 1:56 pm
Replies: 3
by ryang » Thu Mar 22, 2018 7:44 pm

3 Replies

623 Views

Last post by ramcdougal
Fri Mar 23, 2018 1:56 pm
pdb.set_trace() gives Segmentation Fault

Last post by ramcdougal « Mon Mar 12, 2018 6:04 pm
Replies: 1
by homerobse » Mon Mar 12, 2018 1:04 pm

1 Replies

624 Views

Last post by ramcdougal
Mon Mar 12, 2018 6:04 pm
Connect multiple cells using connection probabilities

Last post by ekkya « Sat Mar 03, 2018 10:15 am

by ekkya » Sat Mar 03, 2018 10:15 am

0 Replies

643 Views

Last post by ekkya
Sat Mar 03, 2018 10:15 am
Accessing extracellular mechanism variables from Python

Last post by ted « Fri Feb 16, 2018 9:30 am
Replies: 12
by ksarma » Wed Jul 16, 2008 4:35 pm

12 Replies

4238 Views

Last post by ted
Fri Feb 16, 2018 9:30 am
Updating extracellular values for all segments!

Last post by edaneshi « Tue Feb 13, 2018 3:01 am
Replies: 7
by edaneshi » Sat Feb 10, 2018 6:52 pm

7 Replies

1154 Views

Last post by edaneshi
Tue Feb 13, 2018 3:01 am
xpanel between python and hoc

Last post by ted « Sun Feb 04, 2018 10:29 pm
Replies: 3
by bschneiders » Wed Jan 24, 2018 12:34 pm

3 Replies

711 Views

Last post by ted
Sun Feb 04, 2018 10:29 pm
Need Help Locating File + NEURON not reflecting changes

Last post by GA_ScottRac « Thu Feb 01, 2018 1:20 am
Replies: 4
by GA_ScottRac » Tue Jan 30, 2018 3:56 pm

4 Replies

615 Views

Last post by GA_ScottRac
Thu Feb 01, 2018 1:20 am
Creating NetCon with null source in NEURON+Python

Last post by ted « Sun Dec 31, 2017 12:16 pm
Replies: 10
by pascal » Wed Feb 01, 2017 9:52 am

10 Replies

11310 Views

Last post by ted
Sun Dec 31, 2017 12:16 pm
Finding Neuron install prefix from Python

Last post by tclose « Tue Nov 14, 2017 6:30 pm
Replies: 2
by tclose » Tue Nov 14, 2017 4:19 am

2 Replies

10400 Views

Last post by tclose
Tue Nov 14, 2017 6:30 pm
Is there a model that handles Signaling Pathways in rxd?

Last post by adamjhn « Thu Oct 05, 2017 6:21 pm
Replies: 1
by vogdb » Wed Sep 06, 2017 11:13 am

1 Replies

8232 Views

Last post by adamjhn
Thu Oct 05, 2017 6:21 pm
differences between python2 and python3

Last post by cstricker « Sat Sep 09, 2017 8:41 pm

by cstricker » Sat Sep 09, 2017 8:41 pm

0 Replies

13899 Views

Last post by cstricker
Sat Sep 09, 2017 8:41 pm
Simultaneous equations in python

Last post by ted « Thu Aug 31, 2017 9:22 am
Replies: 4
by catharina » Wed Aug 30, 2017 5:53 am

4 Replies

9273 Views

Last post by ted
Thu Aug 31, 2017 9:22 am
problems with import mod mechanism with python

Last post by menica « Thu Aug 17, 2017 2:38 pm
Replies: 13
by menica » Wed Aug 02, 2017 7:34 am

13 Replies

11092 Views

Last post by menica
Thu Aug 17, 2017 2:38 pm
Memory problem

Last post by ted « Thu Aug 03, 2017 5:33 pm
Replies: 3
by lb5999 » Thu Aug 03, 2017 7:52 am

3 Replies

8779 Views

Last post by ted
Thu Aug 03, 2017 5:33 pm

Return to Board Index