I load this morphology with "new Import3d_SWC_read()" and when I plot the voltage, I get a segmentation violation error.
I have used similar morphologies and others worked well. Unsure what I should be looking for that would be causing this error.
Is it a discontinuity in the SWC points? My experimental collaborators have traced this morphology using Fiji.
Only a section of the morphology is loaded.
Code: Select all
# Exported from SNT v4.1.5 on 2023-03-17T13:24:35.394
# https://imagej.net/SNT
#
# All positions and radii in µm
# Voxel separation (x,y,z): 0.621, 0.621, 2.0
#
1 4 317.675997 193.268998 73.555556 0.000000 -1
2 3 322.712996 185.471998 70.666667 0.000000 1
3 3 322.712996 185.471998 70.666667 0.000000 2
4 3 325.403996 181.952998 70.000000 0.000000 3
5 3 324.782996 181.331998 70.000000 0.000000 4
6 3 324.161996 180.710998 70.000000 0.000000 5
7 3 324.161996 180.089998 70.000000 0.000000 6
8 3 324.161996 179.468998 70.000000 0.000000 7
9 3 323.540996 178.847998 68.000000 0.000000 8
10 3 323.540996 178.226998 68.000000 0.000000 9
11 3 323.540996 177.605998 68.000000 0.000000 10
12 3 322.919996 176.984998 68.000000 0.000000 11
13 3 322.919996 176.363998 68.000000 0.000000 12
14 3 322.919996 175.742998 68.000000 0.000000 13
15 3 322.919996 175.121998 68.000000 0.000000 14
16 3 322.919996 174.500998 68.000000 0.000000 15
17 3 322.919996 173.879998 68.000000 0.000000 16
18 3 322.298996 173.258998 68.000000 0.000000 17
19 3 321.677996 172.637998 68.000000 0.000000 18
20 3 321.056996 172.016998 68.000000 0.000000 19
21 3 320.435996 171.395998 68.000000 0.000000 20
22 3 319.814996 170.774998 68.000000 0.000000 21
23 3 319.193996 170.153998 68.000000 0.000000 22
24 3 318.572996 169.532998 68.000000 0.000000 23
25 3 317.951996 169.532998 68.000000 0.000000 24
26 3 317.330996 168.911998 68.000000 0.000000 25
27 3 316.709996 168.290998 68.000000 0.000000 26
28 3 316.088996 168.290998 68.000000 0.000000 27
29 3 315.467996 167.669998 68.000000 0.000000 28
30 3 314.846996 167.048998 68.000000 0.000000 29
31 3 314.225996 166.427998 68.000000 0.000000 30
32 3 313.604996 166.427998 68.000000 0.000000 31
33 3 312.983996 165.806998 68.000000 0.000000 32
34 3 312.362996 165.185998 68.000000 0.000000 33
35 3 311.741996 164.564998 68.000000 0.000000 34
36 3 311.120996 163.943998 68.000000 0.000000 35
37 3 310.499996 163.943998 68.000000 0.000000 36
38 3 309.878996 163.943998 68.000000 0.000000 37
39 3 309.257996 163.943998 68.000000 0.000000 38
40 3 308.636996 163.943998 68.000000 0.000000 39
41 3 308.015996 163.943998 68.000000 0.000000 40
42 3 307.394996 163.943998 68.000000 0.000000 41
43 3 306.773996 163.322998 68.000000 0.000000 42
44 3 306.152996 162.701998 68.000000 0.000000 43
45 3 305.531996 163.322998 68.000000 0.000000 44
46 3 304.910996 162.701998 68.000000 0.000000 45
47 3 304.289996 162.701998 68.000000 0.000000 46
48 3 303.668996 162.080998 68.000000 0.000000 47
49 3 303.047996 162.080998 68.000000 0.000000 48
50 3 302.426996 162.080998 68.000000 0.000000 49
51 3 301.805996 162.080998 68.000000 0.000000 50
52 3 301.184996 162.080998 68.000000 0.000000 51
53 3 300.563996 162.080998 68.000000 0.000000 52
54 3 299.942996 162.080998 68.000000 0.000000 53
55 3 299.321996 162.080998 68.000000 0.000000 54
56 3 298.700996 161.459998 68.000000 0.000000 55
57 3 298.079996 161.459998 68.000000 0.000000 56
58 3 297.458996 161.459998 70.000000 0.000000 57
59 3 296.837996 161.459998 70.000000 0.000000 58
60 3 296.216996 161.459998 70.000000 0.000000 59
61 3 295.595996 160.838998 70.000000 0.000000 60
62 3 294.974996 160.217998 70.000000 0.000000 61
63 3 294.353996 160.217998 70.000000 0.000000 62
64 3 293.732996 159.596998 70.000000 0.000000 63
65 3 293.111996 159.596998 70.000000 0.000000 64
66 3 292.490996 158.975998 70.000000 0.000000 65
67 3 291.869996 158.975998 70.000000 0.000000 66
68 3 291.248996 158.354998 70.000000 0.000000 67
69 3 290.627996 157.733998 70.000000 0.000000 68
70 3 290.006996 157.733998 70.000000 0.000000 69
71 3 289.385996 157.733998 70.000000 0.000000 70
72 3 288.764996 157.112998 70.000000 0.000000 71
73 3 288.143996 156.491998 70.000000 0.000000 72
74 3 287.522996 155.870998 70.000000 0.000000 73
75 3 286.901996 155.249998 70.000000 0.000000 74
76 3 286.280996 154.628998 72.000000 0.000000 75
77 3 285.659996 154.007998 72.000000 0.000000 76
78 3 285.659996 153.386998 72.000000 0.000000 77
79 3 285.038996 152.765998 72.000000 0.000000 78
80 3 284.417996 152.144998 72.000000 0.000000 79
81 3 283.796996 151.523998 72.000000 0.000000 80
82 3 283.175996 150.902998 72.000000 0.000000 81
83 3 283.175996 150.281998 72.000000 0.000000 82
84 3 282.554996 149.660998 72.000000 0.000000 83
85 3 281.933996 149.039998 72.000000 0.000000 84
86 3 281.933996 148.418998 72.000000 0.000000 85
87 3 281.933996 147.797998 72.000000 0.000000 86
88 3 281.312996 147.176998 70.000000 0.000000 87
89 3 281.933996 147.797998 72.000000 0.000000 88
90 3 281.312996 147.176998 74.000000 0.000000 89
91 3 280.691996 146.555998 76.000000 0.000000 90
92 3 280.070996 145.934998 76.000000 0.000000 91
93 3 279.449996 145.313998 76.000000 0.000000 92
94 3 278.828996 144.692998 76.000000 0.000000 93
95 3 278.828996 144.071998 76.000000 0.000000 94
96 3 278.207996 143.450998 76.000000 0.000000 95
97 3 277.586996 142.829998 78.000000 0.000000 96
98 3 276.965996 142.208998 78.000000 0.000000 97
99 3 276.344996 141.587998 80.000000 0.000000 98
100 3 275.723996 141.587998 80.000000 0.000000 99
101 3 275.102996 141.587998 80.000000 0.000000 100
102 3 274.481996 141.587998 80.000000 0.000000 101
103 3 273.860996 141.587998 80.000000 0.000000 102
104 3 273.239996 141.587998 80.000000 0.000000 103
105 3 272.618996 141.587998 80.000000 0.000000 104
106 3 271.997996 141.587998 80.000000 0.000000 105
107 3 271.376996 142.208998 82.000000 0.000000 106
108 3 270.755996 142.208998 82.000000 0.000000 107
109 3 270.134996 142.208998 82.000000 0.000000 108
110 3 269.513996 142.208998 82.000000 0.000000 109
111 3 268.892996 142.829998 82.000000 0.000000 110
112 3 268.271996 142.829998 82.000000 0.000000 111
113 3 267.650997 142.829998 82.000000 0.000000 112
114 3 267.029997 142.829998 82.000000 0.000000 113
115 3 266.408997 142.829998 82.000000 0.000000 114
116 3 265.787997 142.829998 82.000000 0.000000 115
117 3 265.166997 143.450998 82.000000 0.000000 116
Alexandra