NEURON + Python

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Strange NEURON behavior with multithreading

Last post by rth « Tue Dec 11, 2018 11:53 am

by rth » Tue Dec 11, 2018 11:53 am

0 Replies

1363 Views

Last post by rth
Tue Dec 11, 2018 11:53 am
Error running NEURON with embedded Python

Last post by ttarnaud « Fri Dec 07, 2018 10:56 am

by ttarnaud » Fri Dec 07, 2018 10:56 am

0 Replies

1361 Views

Last post by ttarnaud
Fri Dec 07, 2018 10:56 am
Using VecStim() with CVode on

Last post by ted « Tue Dec 04, 2018 10:59 am
Replies: 3
by MarkoF » Tue Dec 04, 2018 6:20 am

3 Replies

1427 Views

Last post by ted
Tue Dec 04, 2018 10:59 am
Nested for loops over SectionList objects

Last post by selfdestructo « Fri Nov 30, 2018 8:59 am
Replies: 5
by selfdestructo » Tue Nov 27, 2018 8:00 am

5 Replies

1925 Views

Last post by selfdestructo
Fri Nov 30, 2018 8:59 am
Accessing inf_hh and tau_hh in the hh mechanism

Last post by yiliu021 « Tue Nov 27, 2018 1:41 pm
Replies: 6
by yiliu021 » Mon Nov 26, 2018 2:48 pm

6 Replies

2016 Views

Last post by yiliu021
Tue Nov 27, 2018 1:41 pm
undefined symbol: nrnmpi_myid

Last post by ted « Tue Sep 18, 2018 4:30 pm
Replies: 3
by aeronlaffere » Tue Sep 18, 2018 12:34 pm

3 Replies

2245 Views

Last post by ted
Tue Sep 18, 2018 4:30 pm
Error in bash.exe

Last post by ted « Tue Sep 04, 2018 9:34 am
Replies: 1
by ahmed.hamzah » Fri Aug 31, 2018 2:55 pm

1 Replies

1740 Views

Last post by ted
Tue Sep 04, 2018 9:34 am
unload mechanisms dll

Last post by ted « Tue Sep 04, 2018 9:16 am
Replies: 1
by a.negrean » Thu Aug 30, 2018 11:06 am

1 Replies

1766 Views

Last post by ted
Tue Sep 04, 2018 9:16 am
How to Configure System Variables

Last post by ted « Tue Sep 04, 2018 9:15 am
Replies: 1
by ahmed.hamzah » Tue Aug 28, 2018 3:26 pm

1 Replies

1704 Views

Last post by ted
Tue Sep 04, 2018 9:15 am
Not able to run simulation more than once from a NEURON+Python script

Last post by MarkoF « Wed Aug 22, 2018 10:47 am
Replies: 4
by MarkoF » Tue Aug 21, 2018 11:58 am

4 Replies

2400 Views

Last post by MarkoF
Wed Aug 22, 2018 10:47 am
Animation of synapse activation

Last post by rlindroos « Wed Aug 22, 2018 2:17 am
Replies: 4
by rlindroos » Fri Aug 17, 2018 7:31 am

4 Replies

2612 Views

Last post by rlindroos
Wed Aug 22, 2018 2:17 am
Neuron 7.5 + Python 3.7

Last post by Dradeliomecus « Tue Aug 07, 2018 9:28 am
Replies: 2
by Dradeliomecus » Tue Aug 07, 2018 4:06 am

2 Replies

3244 Views

Last post by Dradeliomecus
Tue Aug 07, 2018 9:28 am
Manual Installation of NEURON Python module on Linux Mint 18

Last post by ted « Wed Jun 20, 2018 10:35 am
Replies: 7
by Darth_Malloc » Fri Jun 15, 2018 11:54 am

7 Replies

3433 Views

Last post by ted
Wed Jun 20, 2018 10:35 am
Neuron code

Last post by ahmed.hamzah « Wed Jun 13, 2018 3:20 pm
Replies: 20
by ahmed.hamzah » Thu Jun 07, 2018 8:29 pm
1

2
20 Replies

6772 Views

Last post by ahmed.hamzah
Wed Jun 13, 2018 3:20 pm
Best way(s) to advance() in Python

Last post by ted « Mon May 28, 2018 9:22 pm
Replies: 3
by tommct » Fri May 25, 2018 11:39 am

3 Replies

1961 Views

Last post by ted
Mon May 28, 2018 9:22 pm
Python NEURON

Last post by hines « Fri May 25, 2018 1:16 am
Replies: 15
by FariaVS » Sat Apr 01, 2017 1:28 pm
1

2
15 Replies

19710 Views

Last post by hines
Fri May 25, 2018 1:16 am
gui not accessible and graphs not updating while running simulations from Python

Last post by ramcdougal « Mon May 07, 2018 12:51 pm
Replies: 8
by claudioez » Tue Apr 17, 2018 9:42 am

8 Replies

3510 Views

Last post by ramcdougal
Mon May 07, 2018 12:51 pm
Recording Currents & Current Stimulation

Last post by yiliu021 « Tue Apr 10, 2018 5:33 pm
Replies: 12
by yiliu021 » Tue Apr 03, 2018 5:40 pm

12 Replies

4419 Views

Last post by yiliu021
Tue Apr 10, 2018 5:33 pm
Cannot get Vector.play() and NetCon/NetStim work with CVODE and SaveState.restore()

Last post by hines « Tue Apr 10, 2018 4:47 am
Replies: 4
by JustasB » Fri Apr 06, 2018 7:41 pm

4 Replies

2322 Views

Last post by hines
Tue Apr 10, 2018 4:47 am
Truncation of floats upon loading .hoc file from ipython

Last post by hines « Wed Mar 28, 2018 4:18 pm
Replies: 15
by mbesserve » Mon Mar 19, 2018 10:19 am
1

2
15 Replies

7036 Views

Last post by hines
Wed Mar 28, 2018 4:18 pm
Accessing neuron vectors stored in a python list

Last post by ramcdougal « Fri Mar 23, 2018 1:56 pm
Replies: 3
by ryang » Thu Mar 22, 2018 7:44 pm

3 Replies

1851 Views

Last post by ramcdougal
Fri Mar 23, 2018 1:56 pm
pdb.set_trace() gives Segmentation Fault

Last post by ramcdougal « Mon Mar 12, 2018 6:04 pm
Replies: 1
by homerobse » Mon Mar 12, 2018 1:04 pm

1 Replies

1848 Views

Last post by ramcdougal
Mon Mar 12, 2018 6:04 pm
Connect multiple cells using connection probabilities

Last post by ekkya « Sat Mar 03, 2018 10:15 am

by ekkya » Sat Mar 03, 2018 10:15 am

0 Replies

1704 Views

Last post by ekkya
Sat Mar 03, 2018 10:15 am
Accessing extracellular mechanism variables from Python

Last post by ted « Fri Feb 16, 2018 9:30 am
Replies: 12
by ksarma » Wed Jul 16, 2008 4:35 pm

12 Replies

8152 Views

Last post by ted
Fri Feb 16, 2018 9:30 am
Updating extracellular values for all segments!

Last post by edaneshi « Tue Feb 13, 2018 3:01 am
Replies: 7
by edaneshi » Sat Feb 10, 2018 6:52 pm

7 Replies

2954 Views

Last post by edaneshi
Tue Feb 13, 2018 3:01 am
xpanel between python and hoc

Last post by ted « Sun Feb 04, 2018 10:29 pm
Replies: 3
by bschneiders » Wed Jan 24, 2018 12:34 pm

3 Replies

1920 Views

Last post by ted
Sun Feb 04, 2018 10:29 pm
Need Help Locating File + NEURON not reflecting changes

Last post by GA_ScottRac « Thu Feb 01, 2018 1:20 am
Replies: 4
by GA_ScottRac » Tue Jan 30, 2018 3:56 pm

4 Replies

1959 Views

Last post by GA_ScottRac
Thu Feb 01, 2018 1:20 am
Creating NetCon with null source in NEURON+Python

Last post by ted « Sun Dec 31, 2017 12:16 pm
Replies: 10
by pascal » Wed Feb 01, 2017 9:52 am

10 Replies

14379 Views

Last post by ted
Sun Dec 31, 2017 12:16 pm
Finding Neuron install prefix from Python

Last post by tclose « Tue Nov 14, 2017 6:30 pm
Replies: 2
by tclose » Tue Nov 14, 2017 4:19 am

2 Replies

11475 Views

Last post by tclose
Tue Nov 14, 2017 6:30 pm
differences between python2 and python3

Last post by cstricker « Sat Sep 09, 2017 8:41 pm

by cstricker » Sat Sep 09, 2017 8:41 pm

0 Replies

14956 Views

Last post by cstricker
Sat Sep 09, 2017 8:41 pm
Simultaneous equations in python

Last post by ted « Thu Aug 31, 2017 9:22 am
Replies: 4
by catharina » Wed Aug 30, 2017 5:53 am

4 Replies

10874 Views

Last post by ted
Thu Aug 31, 2017 9:22 am
problems with import mod mechanism with python

Last post by menica « Thu Aug 17, 2017 2:38 pm
Replies: 13
by menica » Wed Aug 02, 2017 7:34 am

13 Replies

16615 Views

Last post by menica
Thu Aug 17, 2017 2:38 pm
Memory problem

Last post by ted « Thu Aug 03, 2017 5:33 pm
Replies: 3
by lb5999 » Thu Aug 03, 2017 7:52 am

3 Replies

9837 Views

Last post by ted
Thu Aug 03, 2017 5:33 pm
Problem about NEURON+Python, using hoc file

Last post by yax317 « Tue Jul 25, 2017 1:34 pm
Replies: 2
by yax317 » Mon Jul 24, 2017 9:39 am

2 Replies

9574 Views

Last post by yax317
Tue Jul 25, 2017 1:34 pm
Any simple way to identify parent segment of point porcess

Last post by rth « Thu Jul 13, 2017 1:43 am
Replies: 8
by rth » Mon Jul 10, 2017 7:30 pm

8 Replies

11554 Views

Last post by rth
Thu Jul 13, 2017 1:43 am
Section of source for h. NetCon() in Python

Last post by catharina « Tue Jul 11, 2017 6:23 am
Replies: 2
by catharina » Mon Jul 10, 2017 11:52 am

2 Replies

9647 Views

Last post by catharina
Tue Jul 11, 2017 6:23 am
DIfferent results with Neuron + Python and with HOC

Last post by ted « Thu Jul 06, 2017 10:51 am
Replies: 3
by Feanor » Mon Jun 26, 2017 12:11 pm

3 Replies

9962 Views

Last post by ted
Thu Jul 06, 2017 10:51 am
nseg not a USEPROPERTY

Last post by hines « Tue Jul 04, 2017 2:53 pm
Replies: 8
by merkdeturk » Thu Jun 22, 2017 4:38 am

8 Replies

12548 Views

Last post by hines
Tue Jul 04, 2017 2:53 pm
Gradual change of synaptic weights for mimicking neuromod...

Last post by rth « Tue Jun 20, 2017 3:17 pm
Replies: 2
by rth » Mon Jun 12, 2017 11:49 pm

2 Replies

9914 Views

Last post by rth
Tue Jun 20, 2017 3:17 pm
uninsert python

Last post by ngreiner « Fri Jun 09, 2017 7:35 am
Replies: 6
by oren » Sun Jul 05, 2015 9:40 am

6 Replies

11176 Views

Last post by ngreiner
Fri Jun 09, 2017 7:35 am
Neuron module recognized only in Terminal

Last post by ted « Sat May 27, 2017 1:18 pm
Replies: 1
by Qonrad » Fri May 26, 2017 7:09 pm

1 Replies

8845 Views

Last post by ted
Sat May 27, 2017 1:18 pm
h.fadvance() stops python threading, why?

Last post by rth « Thu May 11, 2017 7:17 pm
Replies: 2
by rth » Tue May 09, 2017 4:35 pm

2 Replies

9576 Views

Last post by rth
Thu May 11, 2017 7:17 pm
How to create hoc_func_table in NEURON + Python

Last post by hines « Tue May 02, 2017 8:28 pm
Replies: 1
by bwjmbb17 » Tue May 02, 2017 1:06 pm

1 Replies

9689 Views

Last post by hines
Tue May 02, 2017 8:28 pm
Disable NEURON GUI

Last post by ted « Fri Apr 21, 2017 5:14 pm
Replies: 3
by viniciuslima » Thu Apr 13, 2017 10:52 am

3 Replies

9837 Views

Last post by ted
Fri Apr 21, 2017 5:14 pm
Some errors when I run ringtest.py

Last post by ted « Wed Apr 12, 2017 1:54 pm
Replies: 5
by zyc » Tue Apr 11, 2017 3:43 am

5 Replies

10061 Views

Last post by ted
Wed Apr 12, 2017 1:54 pm
Modifying v_init

Last post by bschneiders « Fri Mar 10, 2017 11:02 am
Replies: 2
by bschneiders » Thu Mar 09, 2017 5:04 pm

2 Replies

10841 Views

Last post by bschneiders
Fri Mar 10, 2017 11:02 am
Iterating over just the sections within an object

Last post by pascal « Wed Mar 08, 2017 11:46 am
Replies: 4
by pascal » Fri Mar 03, 2017 10:58 am

4 Replies

9757 Views

Last post by pascal
Wed Mar 08, 2017 11:46 am
Modifying tstop in FInitializeHandler

Last post by iraikov « Fri Mar 03, 2017 2:32 pm
Replies: 7
by iraikov » Thu Mar 02, 2017 10:54 am

7 Replies

10171 Views

Last post by iraikov
Fri Mar 03, 2017 2:32 pm
Neocortical neural networks - Markram model

Last post by FariaVS « Tue Feb 21, 2017 5:47 pm
Replies: 2
by FariaVS » Thu Feb 09, 2017 5:01 pm

2 Replies

9389 Views

Last post by FariaVS
Tue Feb 21, 2017 5:47 pm
Python to hoc

Last post by ted « Fri Feb 03, 2017 12:20 am
Replies: 2
by shyam_u2 » Thu Feb 02, 2017 6:36 pm

2 Replies

9068 Views

Last post by ted
Fri Feb 03, 2017 12:20 am

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