Search found 40 matches
- Thu Sep 14, 2017 10:42 am
- Forum: ModelDB and other online sources of models
- Topic: Wang, Buzsaki 1996's model running issue
- Replies: 11
- Views: 21262
Re: Wang, Buzsaki 1996's model running issue
The model in modeldb has been updated with a vecst.mod file RBett sent. Thanks RBett!
- Wed Sep 13, 2017 11:37 am
- Forum: ModelDB and other online sources of models
- Topic: Wang, Buzsaki 1996's model running issue
- Replies: 11
- Views: 21262
Re: Wang, Buzsaki 1996's model running issue
Yes it is worth putting in ModelDB. Please email me the code (will send separate email to you) and I will upload it!
- Mon Jul 03, 2017 10:36 am
- Forum: ModelDB and other online sources of models
- Topic: couldn't find model on modeldb with accession number 151685
- Replies: 7
- Views: 13432
Re: couldn't find model on modeldb with accession number 151
I am pleased to report that the model has been made available:
Current Dipole in Laminar Neocortex (Lee et al. 2013)
http://modeldb.yale.edu/151685
Current Dipole in Laminar Neocortex (Lee et al. 2013)
http://modeldb.yale.edu/151685
- Thu Jun 15, 2017 4:11 pm
- Forum: ModelDB and other online sources of models
- Topic: couldn't find model on modeldb with accession number 151685
- Replies: 7
- Views: 13432
- Thu Jun 08, 2017 4:06 pm
- Forum: ModelDB and other online sources of models
- Topic: couldn't find model on modeldb with accession number 151685
- Replies: 7
- Views: 13432
Re: couldn't find model on modeldb with accession 151685
Shane Lee apologized for the oversight and is looking for the files.
- Sun Jun 04, 2017 9:48 am
- Forum: ModelDB and other online sources of models
- Topic: couldn't find model on modeldb with accession number 151685
- Replies: 7
- Views: 13432
Re: couldn't find model on modeldb with accession 151685
Thank you for your post. I will contact the authors and request for them to contribute their model.
- Thu Aug 21, 2014 7:35 pm
- Forum: ModelDB and other online sources of models
- Topic: Wang, Buzsaki 1996's model running issue
- Replies: 11
- Views: 21262
Re: Wang, Buzsaki 1996's model running issue
I updated the model in modeldb to run on mswin as well as unix/linux. Please download and try this new version:
http://senselab.med.yale.edu/modeldb/Sh ... odel=26997
http://senselab.med.yale.edu/modeldb/Sh ... odel=26997
- Thu Aug 21, 2014 11:10 am
- Forum: ModelDB and other online sources of models
- Topic: Wang, Buzsaki 1996's model running issue
- Replies: 11
- Views: 21262
Re: Wang, Buzsaki 1996's model running issue
Changing the include file from sys/time.h to just time.h got past this mknrndll error. However there were other errors with the drand48 not being found. I found another model in ModelDB that has some clues about how to convert this to windows from linux: https://senselab.med.yale.edu/modeldb/ShowMod...
- Wed Aug 20, 2014 1:41 pm
- Forum: ModelDB and other online sources of models
- Topic: Wang, Buzsaki 1996's model running issue
- Replies: 11
- Views: 21262
Re: Wang, Buzsaki 1996's model running issue
Start with the mosinit.hoc file instead if that is OK.
I will help you get the model running if the mosinit.hoc doesn't have the part you would like. 1)Which platform (mswin, mac os x, unix/linux) and which 2) version of NEURON (7.3, alpha, hg) are you using?
I will help you get the model running if the mosinit.hoc doesn't have the part you would like. 1)Which platform (mswin, mac os x, unix/linux) and which 2) version of NEURON (7.3, alpha, hg) are you using?
- Mon May 06, 2013 11:31 am
- Forum: UNIX/Linux
- Topic: iv-17 installation problems
- Replies: 6
- Views: 11690
Re: iv-17 installation problems
On an old 10.04LTS ubuntu I found that installing libkaya-ncurses-dev allowed the ncurses, curses, or termcap error message to go away after installing the other packages mentioned above.
- Fri Mar 08, 2013 2:01 pm
- Forum: UNIX/Linux
- Topic: nrnivmodl compiling in Linux
- Replies: 8
- Views: 11615
Re: nrnivmodl compiling in Linux
In ubuntu it is convenient to use synaptic as a package manager. If you don't have it you can add it with a command like sudo apt-get install synaptic When I used synaptic to discover what was missing (I typed ncurses in the synaptic search box when i received the ncurses missing message) I cured th...
- Mon Jan 28, 2013 11:19 am
- Forum: Specific models
- Topic: Vierling-Claassen et al 2010 model in mswin, network view
- Replies: 0
- Views: 13298
Vierling-Claassen et al 2010 model in mswin, network view
________________________________________ From: liu kefei [lkefei@ion.ac.cn] Sent: Thursday, January 24, 2013 4:05 AM To: Morse, Thomas Subject: ModelDB: Dear Mr. or Miss I am wrting to ask a question about auto-run. I saw this in your website: Some models can be run directly from the web page. For t...
- Wed Dec 12, 2012 12:37 pm
- Forum: General questions and discussions about computational neuroscience
- Topic: Can I draw picture in compartment format in NEURON?
- Replies: 2
- Views: 12092
Re: Can I draw picture in compartment format in NEURON?
I am not sure what you mean by compartment format? If you mean just to display the cell in NEURON, first, import the cell in to NEURON by starting NEURON and using NEURON Main Menu - > Tools -> Miscellaneous -> Import3D Import3d_GUI[0] - choose a file (click checkbox) -> browse and select a swc file...
- Mon Aug 20, 2012 1:13 pm
- Forum: Specific models
- Topic: Questions about Traub’s model
- Replies: 4
- Views: 12404
Re: Questions about Traub’s model
Is -66.5425 close enough? I notice that the TCR model soma settles down to that if run for 10 seconds (10000ms). If this is adequate one could examine all the activation and inactivation variables and voltages in each compartment and initialize the model to them to start with a steady state. Note th...
- Sun Aug 19, 2012 11:22 pm
- Forum: Specific models
- Topic: Questions about Traub’s model
- Replies: 4
- Views: 12404
Re: Questions about Traub’s model
Regarding your first question on balancing the conductances: Traub set the max conductance values to reproduce electropysiology experiments as seen in the 2005 paper's appendix and previous papers. It is expected that there are ranges of values of max conductances that could also reproduce the exper...