Search found 43 matches

by tom_morse
Tue Jun 23, 2020 2:16 pm
Forum: NEURON + Python
Topic: ampanmda mod file working with AlphaSynapse
Replies: 7
Views: 1137

Re: ampanmda mod file working with AlphaSynapse

True that NetStim doesn't control the shape of the EPSP just the delivery of events via a listening NetCon. The ampanmda.mod looks like it controls the shape of the EPSP with ampatau and Alpha and Beta. You can also try the simpler exp2syn whose shape can be controlled by setting it's rise and fall ...
by tom_morse
Fri Jun 05, 2020 4:13 pm
Forum: NEURON + Python
Topic: ampanmda mod file working with AlphaSynapse
Replies: 7
Views: 1137

Re: ampanmda mod file working with AlphaSynapse

The AmpaNmda is not connected to the onset of the AlphaSynapse. The AmpaNmda needs to be turned on with an event. Here is an example where the default start time of a NetStim (ns.start) triggers an event through the NetCon to turn the synapse on. NetStim's and NetCon's can be used when there is no n...
by tom_morse
Fri Jun 05, 2020 10:59 am
Forum: NEURON + Python
Topic: ampanmda mod file working with AlphaSynapse
Replies: 7
Views: 1137

Re: ampanmda mod file working with AlphaSynapse

Please mention how you are stimulating the new synapse. Presumably you setup a NetCon that connects it to a NetStim? Please post the code that you are using.
by tom_morse
Thu Sep 14, 2017 10:42 am
Forum: ModelDB and other online sources of models
Topic: Wang, Buzsaki 1996's model running issue
Replies: 11
Views: 23208

Re: Wang, Buzsaki 1996's model running issue

The model in modeldb has been updated with a vecst.mod file RBett sent. Thanks RBett!
by tom_morse
Wed Sep 13, 2017 11:37 am
Forum: ModelDB and other online sources of models
Topic: Wang, Buzsaki 1996's model running issue
Replies: 11
Views: 23208

Re: Wang, Buzsaki 1996's model running issue

Yes it is worth putting in ModelDB. Please email me the code (will send separate email to you) and I will upload it!
by tom_morse
Mon Jul 03, 2017 10:36 am
Forum: ModelDB and other online sources of models
Topic: couldn't find model on modeldb with accession number 151685
Replies: 7
Views: 14755

Re: couldn't find model on modeldb with accession number 151

I am pleased to report that the model has been made available:
Current Dipole in Laminar Neocortex (Lee et al. 2013)
http://modeldb.yale.edu/151685
by tom_morse
Thu Jun 08, 2017 4:06 pm
Forum: ModelDB and other online sources of models
Topic: couldn't find model on modeldb with accession number 151685
Replies: 7
Views: 14755

Re: couldn't find model on modeldb with accession 151685

Shane Lee apologized for the oversight and is looking for the files.
by tom_morse
Sun Jun 04, 2017 9:48 am
Forum: ModelDB and other online sources of models
Topic: couldn't find model on modeldb with accession number 151685
Replies: 7
Views: 14755

Re: couldn't find model on modeldb with accession 151685

Thank you for your post. I will contact the authors and request for them to contribute their model.
by tom_morse
Thu Aug 21, 2014 7:35 pm
Forum: ModelDB and other online sources of models
Topic: Wang, Buzsaki 1996's model running issue
Replies: 11
Views: 23208

Re: Wang, Buzsaki 1996's model running issue

I updated the model in modeldb to run on mswin as well as unix/linux. Please download and try this new version:

http://senselab.med.yale.edu/modeldb/Sh ... odel=26997
by tom_morse
Thu Aug 21, 2014 11:10 am
Forum: ModelDB and other online sources of models
Topic: Wang, Buzsaki 1996's model running issue
Replies: 11
Views: 23208

Re: Wang, Buzsaki 1996's model running issue

Changing the include file from sys/time.h to just time.h got past this mknrndll error. However there were other errors with the drand48 not being found. I found another model in ModelDB that has some clues about how to convert this to windows from linux: https://senselab.med.yale.edu/modeldb/ShowMod...
by tom_morse
Wed Aug 20, 2014 1:41 pm
Forum: ModelDB and other online sources of models
Topic: Wang, Buzsaki 1996's model running issue
Replies: 11
Views: 23208

Re: Wang, Buzsaki 1996's model running issue

Start with the mosinit.hoc file instead if that is OK.

I will help you get the model running if the mosinit.hoc doesn't have the part you would like. 1)Which platform (mswin, mac os x, unix/linux) and which 2) version of NEURON (7.3, alpha, hg) are you using?
by tom_morse
Mon May 06, 2013 11:31 am
Forum: UNIX/Linux
Topic: iv-17 installation problems
Replies: 6
Views: 12138

Re: iv-17 installation problems

On an old 10.04LTS ubuntu I found that installing libkaya-ncurses-dev allowed the ncurses, curses, or termcap error message to go away after installing the other packages mentioned above.
by tom_morse
Fri Mar 08, 2013 2:01 pm
Forum: UNIX/Linux
Topic: nrnivmodl compiling in Linux
Replies: 8
Views: 13307

Re: nrnivmodl compiling in Linux

In ubuntu it is convenient to use synaptic as a package manager. If you don't have it you can add it with a command like sudo apt-get install synaptic When I used synaptic to discover what was missing (I typed ncurses in the synaptic search box when i received the ncurses missing message) I cured th...
by tom_morse
Mon Jan 28, 2013 11:19 am
Forum: Specific models
Topic: Vierling-Claassen et al 2010 model in mswin, network view
Replies: 0
Views: 14005

Vierling-Claassen et al 2010 model in mswin, network view

________________________________________ From: liu kefei [lkefei@ion.ac.cn] Sent: Thursday, January 24, 2013 4:05 AM To: Morse, Thomas Subject: ModelDB: Dear Mr. or Miss I am wrting to ask a question about auto-run. I saw this in your website: Some models can be run directly from the web page. For t...