Search found 6 matches

by pgleeson
Tue Jul 14, 2009 12:14 pm
Forum: Reaction-diffusion in NEURON
Topic: Introduction and request for suggestions
Replies: 5
Views: 9873

Re: Introduction and request for suggestions

Hi, Somewhat related to this is the following short utility for converting SBML to native NEURON code (NMODLfiles): http://www.neuroml.org/neuron_tools.php It needs some further development but could be useful for getting more advanced signalling pathway in SBML format directly into NEURON. It will ...
by pgleeson
Fri Jan 25, 2008 9:26 am
Forum: UNIX/Linux
Topic: Be sure your Linux can compile source code
Replies: 2
Views: 6726

More packages needed to compile mod

Hi,

The following packages may also be needed for successful mod compilation:

libsm-devel and python-devel.

Most modern Linux distros will have a package manager which will allow easy install of these.
by pgleeson
Fri Dec 21, 2007 6:34 am
Forum: NEURON Announcements
Topic: NEURON 6.1.1 now available
Replies: 2
Views: 8334

NeuroML import/export

Hi, Updates to the NeuroML import and export functions are available at: http://neuroml.svn.sourceforge.net/viewvc/neuroml/NeuroML2nrn/ (for import of NeuroML based morphologies) and http://neuroml.svn.sourceforge.net/viewvc/neuroml/nrn2NeuroML/ (for export of cell structures from ModelView in Neuro...
by pgleeson
Fri Dec 21, 2007 6:22 am
Forum: UNIX/Linux
Topic: nrnjava on fedora 7 in order to use neuroconstruct
Replies: 1
Views: 2776

nrnjava and neuroconstruct

You don't need to have java enabled in NEURON to get neuroConstruct to work. The Java interface was put in a few years back to use Robert Cannon's Channel Builder I believe, but that was eventually re written in hoc. I tried using the java interface initially (4 years ago...) for interaction with ne...
by pgleeson
Wed Oct 26, 2005 1:59 pm
Forum: General questions and discussions about computational neuroscience
Topic: SFN 2005 Itinerary Planner and Abstract Viewer
Replies: 1
Views: 4515

Hi, I didn't get it working under linux. It worked on my WinXP laptop, installing a local executable (including a JRE) which runs a java application. It seems they've just not created the same installer for the java application under linux. I've used the online version of the abstract browser, and w...
by pgleeson
Wed Oct 26, 2005 1:47 pm
Forum: Other questions
Topic: NEURON models at SFN 2005 meeting
Replies: 3
Views: 5400

Hi,

I'll be presenting the following:

965.14
P3
P.J.Gleeson; V.Steuber; R.Silver
SIMULATION OF SYNAPTIC INTEGRATION IN BIOLOGICALLY REALISTIC 3D NEURONAL NETWORKS USING NEUROCONSTRUCT: A NEW MODELING TOOL

Regards,
Padraig