Search found 5 matches

by tmazing
Sun Jun 16, 2019 10:44 am
Forum: Adding new mechanisms and functions to NEURON
Topic: Loading New Artifical Cell into NEURON
Replies: 5
Views: 1475

Re: Loading New Artifical Cell into NEURON

I named the mod file IntFire4r.mod and inside of the file, the first line of the neuron block is: ARTIFICIAL_CELL IntFire4r. A x86_64 directory was produced with no error message. When I cd to the directory and call nrngui, I get: AMPA_DynSyn.mod B_A.mod B_DR.mod B_Na.mod CaIntraCellDyn.mod Elliott....
by tmazing
Sat Jun 15, 2019 4:15 pm
Forum: Adding new mechanisms and functions to NEURON
Topic: Loading New Artifical Cell into NEURON
Replies: 5
Views: 1475

Re: Loading New Artifical Cell into NEURON

Hello!

1) named the new class IntFire4r.
2) I used the nrnivmodl command in the terminal within the folder containing the code.
3) The python line -- cell1 = h.IntFire4r() returns the following error:
AttributeError: 'hoc.HocObject' object has no attribute 'IntFire4r'
by tmazing
Fri Jun 14, 2019 1:41 pm
Forum: Adding new mechanisms and functions to NEURON
Topic: Loading New Artifical Cell into NEURON
Replies: 5
Views: 1475

Loading New Artifical Cell into NEURON

Hello! So I've made a modified IntFire cell that I'd like to load into NEURON as an artificial cell. However, when I compile the mod files into neuron, the artificial cell still isn't loaded. Do I need to put my mod file in a special location and compile in a special way since it's an artificial cel...
by tmazing
Thu May 16, 2019 9:01 pm
Forum: Other questions
Topic: Plotting M for IntFire4
Replies: 4
Views: 1172

Plotting M for IntFire4

Hello!

I was wondering if anyone could let me know how to plot M for IntFire4. Unfortunately, it's not a global or range variable, but a function, so I'm not sure how to plot it with Python. I've tried using:

mvec = h.Vector()
mvec.record(h._ref_M)

with no luck. Thanks!
by tmazing
Wed Feb 06, 2019 11:04 pm
Forum: OS X
Topic: Trouble Compiling Mod2 Files on Virtual Environment
Replies: 1
Views: 2202

Trouble Compiling Mod2 Files on Virtual Environment

Hello all! So I'm currently trying to run neuron via Python 2.7 on a virtual environment (using anaconda). I've been successful in running python, but am having trouble getting it to integrate with neuron. When I add my import neuron line, I receive this error: dlopen failed - dlopen(x86_64/.libs/li...