Search found 5 matches

by Vittorio
Thu Feb 15, 2018 10:58 am
Forum: NetPyNE
Topic: Mat file not saved properly in batch functions
Replies: 1
Views: 146

Mat file not saved properly in batch functions

Hi, I have some issue saving mat files with the batch process. When I save the mat files with the batch function (e.g. tutorial 8), the mat file doesn’t contain information about the neurons spikes/traces although it is indicated in the parameter file e.g. cfg.recordCells = ['all'] # which cells to ...
by Vittorio
Fri Sep 01, 2017 11:38 am
Forum: NetPyNE
Topic: Examples how to use the plotShape function
Replies: 7
Views: 7852

Re: Examples how to use the plotShape function

Hi Salva! yes, I followed all steps you indicated to pull the development version. The output of git branch is * development master and, the output of git log -1 is commit 7b75ba78f48385d4c4467d7926fd08b588fa2a02 Author: salvadord <salvadordura@gmail.com> Date: Thu Aug 31 11:45:25 2017 -0400 Fixed c...
by Vittorio
Thu Aug 31, 2017 5:45 pm
Forum: NetPyNE
Topic: Examples how to use the plotShape function
Replies: 7
Views: 7852

Re: Examples how to use the plotShape function

Thanks! I pulled the development version and tried a few files (e.g. geom.hoc of the tutorial) but I always get this error: line 778, in getCellsList if sim.nhosts > 1 and any(isinstance(cond, tuple) or isinstance(cond,list) for cond in include): # Gather tags from all cells AttributeError: 'module'...
by Vittorio
Thu Aug 31, 2017 12:25 pm
Forum: NetPyNE
Topic: Examples how to use the plotShape function
Replies: 7
Views: 7852

Re: Examples how to use the plotShape function

Thanks Salva for the examples!

How do I pull the development version of NetPyNE?
by Vittorio
Wed Aug 30, 2017 4:32 pm
Forum: NetPyNE
Topic: Examples how to use the plotShape function
Replies: 7
Views: 7852

Examples how to use the plotShape function

Hi all,

can somebody point me towards an example of how to use the plotShape function in netpyne?

Also, is it possible to use this function to create a movie or just single snapshots at different time points to show the spatial distribution of a variable?

Thanks!