Search found 10 matches

by ecker.andris
Fri Nov 17, 2017 6:33 pm
Forum: NetPyNE
Topic: C++ memory? error, using NetPyNE
Replies: 10
Views: 14448

Re: C++ memory? error, using NetPyNE

Well either you run the scripts generating the mod files from those channels (the ones you've compiled correspond to the NEURON version) or I think the best would be if you could write me an e-mail to andras.ecker@epfl.ch and I'll send you everything instead of putting big files to github. Thanks, A...
by ecker.andris
Fri Nov 17, 2017 8:33 am
Forum: NetPyNE
Topic: C++ memory? error, using NetPyNE
Replies: 10
Views: 14448

Re: C++ memory? error, using NetPyNE

oh, good point. Just added it!

András
by ecker.andris
Wed Nov 15, 2017 5:27 am
Forum: NetPyNE
Topic: C++ memory? error, using NetPyNE
Replies: 10
Views: 14448

Re: C++ memory? error, using NetPyNE

Hi Salva, you can find the repo here: https://github.com/mbezaire/ca1/tree/development/ and we are mostly using: `NeuroML2/network/GenerateHippocampalNet_oc.py` which creates an xml (or h5 based on the size) simulation, which gets converted to NetPyNE (by jNeuroML) during zipping for NSG here: https...
by ecker.andris
Fri Nov 10, 2017 12:28 pm
Forum: NetPyNE
Topic: C++ memory? error, using NetPyNE
Replies: 10
Views: 14448

Re: C++ memory? error, using NetPyNE

Hi Salva,

we've implemented the changes you've suggested and tried to save spike only from 100 cells and traces for ~40 but I still get the same error!
For smaller network size I was able to save spikes from up to 500 cells and traces from ~40.

Do you have any other idea in mind?

Thanks,
András
by ecker.andris
Wed Oct 25, 2017 1:33 pm
Forum: UNIX/Linux
Topic: NEURON 7.4 1370 vs 1380
Replies: 5
Views: 10043

Re: NEURON 7.4 1370 vs 1380

Thank you Ted!
by ecker.andris
Wed Oct 25, 2017 12:21 pm
Forum: NetPyNE
Topic: C++ memory? error, using NetPyNE
Replies: 10
Views: 14448

Re: C++ memory? error, using NetPyNE

Hi Salva, I saw on the github repo that you are working with Padraig and Marianne, so I assume the conversion of the model into netpyne was done correctly. I've discussed with them in the last couple conferences converting the CA1 model into netpyne, so glad to see this is happening. Please let me k...
by ecker.andris
Wed Oct 25, 2017 7:13 am
Forum: UNIX/Linux
Topic: NEURON 7.4 1370 vs 1380
Replies: 5
Views: 10043

Re: NEURON 7.4 1370 vs 1380

Maybe I'm missing something but there are no configure files in the mentioned git repos and I can't compile them after cloning
using

Code: Select all

./configure
What do I miss?
by ecker.andris
Tue Oct 24, 2017 4:52 pm
Forum: UNIX/Linux
Topic: NEURON 7.4 1370 vs 1380
Replies: 5
Views: 10043

Re: NEURON 7.4 1370 vs 1380

Thank you very much Ted!
by ecker.andris
Tue Oct 24, 2017 4:50 pm
Forum: NetPyNE
Topic: C++ memory? error, using NetPyNE
Replies: 10
Views: 14448

C++ memory? error, using NetPyNE

Hi, I'm using jNeuroML generated NetPyNE codes to run a big scale hippocampal model on NSG (tool: OSBPYNEURON74 @ Comet) (see model repo here: https://github.com/mbezaire/ca1/tree/development) and after increasing the size to ~650 cells I get an error, which looks like a memory error to me, but acco...
by ecker.andris
Tue Sep 12, 2017 11:14 am
Forum: UNIX/Linux
Topic: NEURON 7.4 1370 vs 1380
Replies: 5
Views: 10043

NEURON 7.4 1370 vs 1380

Hi, I was wondering what are the major differences in 7.4 version 1370 and 1380? After a global upgrade (I guess I upgraded NEURON too), some of my models (mostly the ones with calcium dynamics) failed to reproduce the same spike times... Is it possible to have multiple installs and change between t...