Search found 12 matches

by Javier_PalmaEspinosa
Sun Nov 06, 2016 12:15 pm
Forum: UNIX/Linux
Topic: Bug found(?): Linux Mint 18 with Anaconda
Replies: 1
Views: 13779

Bug found(?): Linux Mint 18 with Anaconda

Hi all! After 3 days of pain, horror, sleep deprivation and other atrocities, I was able to install Neuron in my machine. The story is more or less like this: I had worked with python packaged installed by hand (pip install package), and I didn't want to waste time in installing every package that I...
by Javier_PalmaEspinosa
Wed Mar 16, 2016 4:49 pm
Forum: UNIX/Linux
Topic: Unix/linux installation failure
Replies: 3
Views: 9223

Re: Unix/linux installation failure

Hello RBJ
I am having the EXACT problem, but running on OS X El Capitán.
Could you please, post exactly what you did in order to solve the issue?

do you know what those obscure headers do? (Xext.h and shape.h)
by Javier_PalmaEspinosa
Wed Mar 02, 2016 4:21 pm
Forum: OS X
Topic: [SOLVED] libtool: No such file or directory
Replies: 3
Views: 11969

Re: libtool: No such file or directory

I take it slowly this time. It was the lack of command tools, as you told in your link.
I uninstalled neuron, installed Command Tools, and reinstaled neuron. Now it works almost perfect (no mpi, but it is not critical).
Thank you!
by Javier_PalmaEspinosa
Tue Mar 01, 2016 1:34 pm
Forum: OS X
Topic: [SOLVED] libtool: No such file or directory
Replies: 3
Views: 11969

Re: libtool: No such file or directory

I've look the pdf. As far as I understand, it says that I must install command line tools from XCode, which I have Javier@Javiers-MacBook-Pro:/Applications/NEURON-7.4/nrn/share/nrn$ which libtool /usr/bin/libtool what puzzles me is this line, when trying to compile a mod file /bin/sh: /Applications/...
by Javier_PalmaEspinosa
Tue Mar 01, 2016 9:49 am
Forum: OS X
Topic: [SOLVED] libtool: No such file or directory
Replies: 3
Views: 11969

[SOLVED] libtool: No such file or directory

Dear all, Because of several issues with my computer, I had to install neuron all over again. My computer runs last version of El Capitan. I followed the install walkthrough posted on https://www.neuron.yale.edu/neuron/download/compilestd_osx The installing process was smooth, except for the make in...
by Javier_PalmaEspinosa
Sat Dec 26, 2015 9:39 pm
Forum: OS X
Topic: [SOLVED] Compilation issues in El Capitan with 2 hard drives
Replies: 13
Views: 12377

Re: [SOLVED] Compilation issues in El Capitan with 2 hard dr

After taking a break off trying to install NEURON, the issue was solved with the help of my friends </beatles>. It seems that there is something strange with my home path, which is not in /Users/whatever but instead is in /Volumes/Macintosh HD/myHome. Apparently this was the issue because the compil...
by Javier_PalmaEspinosa
Wed Nov 18, 2015 5:14 pm
Forum: OS X
Topic: [SOLVED] Compilation issues in El Capitan with 2 hard drives
Replies: 13
Views: 12377

Re: Compilation issues in El Capitan with 2 hard drives

Sorry, I've been quite busy this days. I hope tomorrow I could run and check once more time my issues and give you a propper answer.
Thank you for the advices
by Javier_PalmaEspinosa
Sat Nov 14, 2015 9:53 pm
Forum: OS X
Topic: [SOLVED] Compilation issues in El Capitan with 2 hard drives
Replies: 13
Views: 12377

Re: Compilation issues in El Capitan with 2 hard drives

I did exactly what you told me. Javier@MacBook-Pro-de-Javier:~/neuron/iv$ sudo ln -s /Volumes/Macintosh\ HD/ /Volumes/Macintosh_HD Javier@MacBook-Pro-de-Javier:~/neuron/iv$ export IDIR=/Volumes/Macintosh_HD/Javier/Applications/Neuron Javier@MacBook-Pro-de-Javier:~/neuron/iv$ sh ./build.sh glibtooliz...
by Javier_PalmaEspinosa
Fri Nov 13, 2015 1:26 pm
Forum: OS X
Topic: [SOLVED] Compilation issues in El Capitan with 2 hard drives
Replies: 13
Views: 12377

Re: Compilation issues in El Capitan with 2 hard drives

Ok, I'm puzzled now. I did a simbolic link. I'm going to detail every step, in case I did something wrong. so the first thing was to make a folder in /Volumes. $sudo mkdir /Volumes/Macintosh $sudo ln -s /Volumes/Macintosh\ HD/Javier /Volumes/Macintosh Javier@MacBook-Pro-de-Javier:/Volumes$ ls Macint...
by Javier_PalmaEspinosa
Thu Nov 12, 2015 9:27 pm
Forum: OS X
Topic: [SOLVED] Compilation issues in El Capitan with 2 hard drives
Replies: 13
Views: 12377

Re: Compilation issues in El Capitan with 2 hard drives

Thank you. Will try it tomorrow
by Javier_PalmaEspinosa
Thu Nov 12, 2015 3:10 pm
Forum: OS X
Topic: [SOLVED] Compilation issues in El Capitan with 2 hard drives
Replies: 13
Views: 12377

Re: Compilation issues in El Capitan with 2 hard drives

I tried several configurations on IDIR. I used: IDIR=/Volumes/Macintosh\ HD/Javier/Applications/Neuron IDIR='/Volumes/Macintosh HD/Javier/Applications/Neuron' IDIR="/Volumes/Macintosh HD/Javier/Applications/Neuron" IDIR=/Volumes/Macintosh*HD/Javier/Applications/Neuron I tried passing the argument --...
by Javier_PalmaEspinosa
Wed Nov 11, 2015 5:18 pm
Forum: OS X
Topic: [SOLVED] Compilation issues in El Capitan with 2 hard drives
Replies: 13
Views: 12377

[SOLVED] Compilation issues in El Capitan with 2 hard drives

Dear all, I am having issues instaling Neuron in my Mac. I am currently running OSX ver 10.11.1(aka El Capitan). My machine is a MacBook Pro with two hard drives (Macintosh HD and Macintosh SSD) I need to use Neuron with python, so I am following the walkthrough shown in https://www.neuron.yale.edu/...