Search found 7 matches

by subhasishg
Fri Sep 27, 2013 1:17 pm
Forum: Getting started
Topic: Isolate a section from a neuron
Replies: 6
Views: 2130

Re: Isolate a section from a neuron

Thanks Hines, let me try it out.
by subhasishg
Thu Sep 26, 2013 7:51 am
Forum: Getting started
Topic: Isolate a section from a neuron
Replies: 6
Views: 2130

Re: Isolate a section from a neuron

Let me just first go through these chapters, I'll come back if required.
Thanks again for your time and help.
by subhasishg
Wed Sep 25, 2013 10:54 pm
Forum: Getting started
Topic: Isolate a section from a neuron
Replies: 6
Views: 2130

Re: Isolate a section from a neuron

Sorry for labeling the code as simple, it's definitely not. But, the simulator makes it appear so easy.
Is there any documentation describing the simulator internals. What files should I look into to understand how Neuron goes about doing this calculation.
What all are the parameters to consider.
by subhasishg
Wed Sep 25, 2013 11:35 am
Forum: Getting started
Topic: Isolate a section from a neuron
Replies: 6
Views: 2130

Isolate a section from a neuron

Hi, I have a simple cell modeled with some sections and segments in each. I have HH Mechanism inserted. 1. First, I use a IClamp in section X and plot the voltage at section X & Y. 2. Next, I want to isolate section Y (i.e remove all other sections) and apply a suitable IClamp and generate voltage p...
by subhasishg
Mon Jul 08, 2013 9:41 am
Forum: Modeling networks
Topic: mixed model of artificial and conduction-based cells
Replies: 20
Views: 8798

Re: mixed model of artificial and conduction-based cells

Thanks a lot Ted, you just gave me a Jackpot for information.
by subhasishg
Sun Jul 07, 2013 4:42 am
Forum: Modeling networks
Topic: mixed model of artificial and conduction-based cells
Replies: 20
Views: 8798

Re: mixed model of artificial and conduction-based cells

I notice that you reset the membrane voltage. I am also trying to manipulate the membrane voltage v in the mod file. How did you make sure that the internal variable v does not conflict with the voltage reset (v = c) that you are doing ? Is there any way to stop the internal integration for v and th...
by subhasishg
Fri Jul 05, 2013 11:16 am
Forum: Getting started
Topic: Attach IZH model to a cell
Replies: 1
Views: 904

Attach IZH model to a cell

Hi, I have a very basic cell which I took from: http://www.anc.ed.ac.uk/school/neuron/tutorial/tutB.html Basically, it's a Soma and two dendrites. nseg = 1 for soma and nseg = 5 for both the dendrites. I want to use IZH model for the cell. What I am basically trying to do is, inject some current thr...