Search found 6 matches

by dave_arthurs
Wed May 21, 2014 10:01 pm
Forum: Parallel NEURON
Topic: usable mindelay is 0
Replies: 6
Views: 7758

Re: usable mindelay is 0

I appreciate your feedback and your offline help. Your solutions worked. To summarize: - As per your suggestions, the parallel error (usable mindelay is 0) was fixed by setting "DELAY = 1" in destexhe_benchmarks/NEURON/common/net.hoc - The segmentation fault when running in serial mode was fixed by ...
by dave_arthurs
Wed May 21, 2014 3:47 pm
Forum: Parallel NEURON
Topic: usable mindelay is 0
Replies: 6
Views: 7758

Re: usable mindelay is 0

Thank you both for your feedback. Michael, I have sent you an email with the trace.
by dave_arthurs
Tue May 20, 2014 1:03 am
Forum: Parallel NEURON
Topic: usable mindelay is 0
Replies: 6
Views: 7758

usable mindelay is 0

Hi folks, I'm trying to get the model by Brette et al. 2007 "Simulation of networks of spiking neurons: a review of tools and strategies" (accession 83319) working in Neuron-7.3 on OS X Mavericks 10.9.2. I have done the following: 1) Fresh install of Neuron from the DMG, set up path in .bash_profile...
by dave_arthurs
Mon May 19, 2014 7:59 pm
Forum: Parallel NEURON
Topic: Parallel Neuron with Firewall on OS X
Replies: 0
Views: 7419

Parallel Neuron with Firewall on OS X

Hi everyone, I was recently trying to get parallel neuron running, and I encountered a rather strange issue. Essentially, I found that when following the installation and test instructions shown here (http://www.neuron.yale.edu/neuron/download/compilestd_osx), I could not run any mpi versions of neu...
by dave_arthurs
Wed May 07, 2014 6:10 pm
Forum: Getting started
Topic: Best practices for cell template
Replies: 1
Views: 2245

Best practices for cell template

Hi, I'm very new to neuron, having just gone through the tutorial by Gillies and Sterratt (http://www.anc.ed.ac.uk/school/neuron/). I'm trying to build a complex neural network that has multiple neuron types. For each neuron, I would like to have both a constant injected current (IClamp) and also a ...
by dave_arthurs
Sun Nov 17, 2013 4:37 pm
Forum: Adding new mechanisms and functions to NEURON
Topic: Setting default reversal potential for an ionic species
Replies: 1
Views: 3075

Setting default reversal potential for an ionic species

Hello, I am very new to NEURON and have a basic question. Specifically, I am wondering if there is a way to specify the default reversal potential for an ionic species, for example, potassium, such that all ion channels that use this ion will have the same default reversal potential. The one way I h...