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excellent.

Hello, I haven't seen this question asked in any relevant forum. My lab has a NEURON simulation that consumes a little too much RAM and I was wondering if it is possible to save the values of all state variables at a particular time and restart the simulation with exactly those values. Thank you, -Y...

This documentation is for plotting raster plots ONLY. Please refer to the online documentation of pylab, NEURON, and Python to learn more about plotting NEURON/Python data. 1. Python Raster Plots for NEURON/Python Simulations This section assumes all your cells and parameters have been initialized i...

Hello, Thank you for your replies. I took a similar approach to what you suggested and figured out what was wrong. My project currently involves taking a simulation coded entirely in NEURON and graph all output in python. It turns out I was pointing the netcon object to h.PM .soma(.5)._ref_v (where ...

Hello, Is is possible to create a raster plot of a network of cells using pylab the same way I can record and create a graph of the membrane potentials of cells? I've tried following the syntax used in the NEURON documentation to the best of my ability: tobj = h.NetCon(h.PM[0].soma(.5)._ref_v, h.nil...

Great, that will prove to be very useful.

Thanks for the help!

-Youngmin

Hello, I understand the syntax for assigning values to an "internal" object like a soma is something like: for seg in soma: seg.hh.gnabar = 0.11 to change the gnabar of hh. I am currently trying to do something similar for a parameter defined in an ses file. I have a soma defined through P...

Thank you very much for your help. After a little more tweaking I have been able to get the results I wanted.

-YMP

Hi again, Is there a way to change the values set by the ses files through python? For example if I created a denisty mechanism called A where the default gmax is 0.1. I then insert the mechanism into the python defined soma with h('insert A') and verify that it indeed exists in the python soma with...

OS: Linux Mint Version: NEURON 7.1 Python version: 2.6.2 I double checked the mechanisms and they are indeed density mechanisms. According to psection the mechanisms were placed properly but I am still not getting the results I am looking for. I am starting to think I am not using the NetCon command...

Thank you for your reply. I was able to load the ses file but when I tried to insert one of my mechanisms with the command soma.insert('A') it says A is not a density argument name. I've also tried creating a soma in hoc using h('create soma') and tried h.soma.insert('A') but I got the the same erro...

Hello, I am currently working on translating a NEURON model into Python and I would like to know if there is a way to get Channel Builder info/code from the GUI into something Python can use. I know how to get the hoc code as well as a text file info of the channel density mechanisms specified by ch...