Problem running PFC cell model (modelDB)
Posted: Mon Feb 23, 2015 9:55 am
Hi,
I was trying to run this model of a Pre-Frontal Cortex cell available in ModelDB:
https://senselab.med.yale.edu/ModelDB/S ... PFCcell%5c
The auto-lunch works ok, i.e., it opens NEURON, runs the model and plots one the Figures of the paper. However, I have not been able to run it using the unzipped package. I followed the instructions in the readme file, except that the readme didn't specify that the .mod files are in a particular folder. So I compiled the files in the "mechanism" folder, and then doubled click on the mosinit.hoc file and I got this:
I've tried moving the compiled .dll from here to there, but it seems it always gets trouble trying to insert the kad mechanism.
Also, two other people in different Windows computers have independently tried to run the model without success.
Any help is greatly appreciated. Thanks a lot in advance!
I was trying to run this model of a Pre-Frontal Cortex cell available in ModelDB:
https://senselab.med.yale.edu/ModelDB/S ... PFCcell%5c
The auto-lunch works ok, i.e., it opens NEURON, runs the model and plots one the Figures of the paper. However, I have not been able to run it using the unzipped package. I followed the instructions in the readme file, except that the readme didn't specify that the .mod files are in a particular folder. So I compiled the files in the "mechanism" folder, and then doubled click on the mosinit.hoc file and I got this:
Code: Select all
NEURON -- Release 7.3 (849:5be3d097b917) 2013-04-11
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2013
See http://www.neuron.yale.edu/neuron/credits
1
1
1
1
0
1
1
1
0
object ExperimentControl created.
1
0
0
1
0
morphology file opened 22
C:\nrn73w64\bin64\nrniv.exe: syntax error
in ../../experiment/IBcell.hoc near line 82
insert h
^
xopen("../../experiment/IBcell.hoc")
ExperimentControl[0].execute1("xopen("../../experiment/IBcell.hoc")")
ExperimentControl[0].xopen_generic("IBcell")
xopen("persistentIB.hoc")
and others
0
C:\nrn73w64\bin64\nrniv.exe: syntax error
in ../../experiment/IBcell.hoc near line 83
gbar_h(x) = gh_soma + (gh_end - gh_soma)/(1.0 + exp((H_dhalf-xdist)/H_st
eep))
^
xopen("persistentIB.hoc")
execute1("{xopen("persistentIB.hoc")}")
load_file("persistentIB.hoc")
xopen("init.hoc")
and others
0
C:\nrn73w64\bin64\nrniv.exe: syntax error
in ../../experiment/IBcell.hoc near line 84
}
^
xopen("init.hoc")
execute1("{xopen("init.hoc")}")
load_file("init.hoc")
0
C:\nrn73w64\bin64\nrniv.exe: syntax error
in ../../experiment/IBcell.hoc near line 95
insert kad
^
oc>
I've tried moving the compiled .dll from here to there, but it seems it always gets trouble trying to insert the kad mechanism.
Also, two other people in different Windows computers have independently tried to run the model without success.
Any help is greatly appreciated. Thanks a lot in advance!