www.neuron.yale.edu

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public soma, BasalTrunk, basal1, basal2, ApicalTrunk, Apical1, Apical2
public Obliques
public all, Basals
public AMPAinL,NMDAinL,AMPAinR,AMPAinL
public GABAin

objref synlist
objectvar AMPAinL,NMDAinL,AMPAinR,NMDAinR //the synapse objects
objectvar GABAin

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proc init() {
  topol()
  subsets()
  geom()
  biophys()
  geom_nseg()
  synlist = new List()
  synapses()
  NMDAinit()
  
  x = y = z = 0 // only change via position
}

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proc synapses() {
//synapse on the left basal dendrite
basal1(1) AMPAinL = new ExpSyn() synlist.append(AMPAinL)
basal1(1) AMPAinL{
tau=2 //decay time is 2ms
e=0 //reverse potential is 0 mV
}


//synapses on the right basal dendrite
basal2(1) AMPAinR = new ExpSyn() synlist.append(AMPAinR)
basal2(1) AMPAinR{
tau=2 //decay time is 2ms
e=0 //reverse potential is 0 mV
}

//a GABA synapse on the soma
soma(1) GABAin=new ExpSyn() synlist.append(GABAin)
soma(1) GABAin{
  tau=10 //decay time is 10ms
  e=-70 //the reverse potential for inhibitory synapses is -70mV

}
}

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load_file("nrngui.hoc")
xopen("PyrCell5.tem")

// load the template
objectvar pyr
pyr=new PyrCell5()

//a current injection into the soma

objectvar iinject
pyr.soma iinject = new IClamp(.5)
// note: for older versions of neuron, use PulseStim instead of IClamp
iinject.del = 2   //start at 2msecond
iinject.dur = 10	// 10 ms of duration
iinject.amp = 3   //3 nanoampere of current


// a spiking activity into the basals
objectvar inspike,incon
inspike=new NetStim()
inspike {
interval=1
number=100
start=2
noise=0
}

//connect the input to the synapse
// the weight is the peak conductance a low level at the beginning
// like 3 nanosiemes
gmaxAMPA=1e-9
incon=new NetCon(inspike,pyr.AMPAinL,0,0,gmaxAMPA)

access pyr.soma

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incon=new NetCon(inspike,pyr.synlist.obj(0),0,0,gmaxAMPA)