EOF in fscan
Posted: Mon Feb 20, 2023 5:54 pm
hello
I am using a L23 pyramidal neuron from the HBP cortical microcircuit, Aberra et al 2018 https://senselab.med.yale.edu/ModelDB/S ... del=241165. I replace the morphology of a L23 cortical cell with my own morphology, but I preserve mechnanisms and synapse distribution from the HBP. If the morphology is in neurolucida (asc) format I can load the cell succesfully and insert mechanisms and synapses. If instead the morphology is given in swc format, I can still load the cell successfully, insert mechanisms but I cannot insert synapses. I get the following error. I attach part of my swc file and part of the synapse file (tsv) from HBP. Any guidance on this error would help very much.
thank you,
Alexandra
here is part of my "swc" morpholgy file (not attached in full due to character limitations):
here is a section of my "tsv" synapse file (not attached in full due to character limitations):
I am using a L23 pyramidal neuron from the HBP cortical microcircuit, Aberra et al 2018 https://senselab.med.yale.edu/ModelDB/S ... del=241165. I replace the morphology of a L23 cortical cell with my own morphology, but I preserve mechnanisms and synapse distribution from the HBP. If the morphology is in neurolucida (asc) format I can load the cell succesfully and insert mechanisms and synapses. If instead the morphology is given in swc format, I can still load the cell successfully, insert mechanisms but I cannot insert synapses. I get the following error. I attach part of my swc file and part of the synapse file (tsv) from HBP. Any guidance on this error would help very much.
thank you,
Alexandra
Code: Select all
1
1
Starting to add synapses
/usr/local/lib/python3.9/site-packages/neuron/.data/bin//nrniv: EOF in fscan
in init.hoc near line 49
}
^
Matrix[0].scanf(File[0]) // File[0] is the synapse file given in "tsv" format
synapses_c2e79db05a[0].load_synapses(cADpyr229_L23_PC_c2e79db05a[0]) // cADpyr229_L23_PC_c2e79db05a is the swc morphology file
cADpyr229_L23_PC_c2e79db05a[0].load_synapses()
cADpyr229_L23_PC_c2e79db05a[0].init(1)
and othersCode: Select all
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