I'm trying to simulate ion accumulation/depletion and diffusion in the Frankenhauser Hodgkin space surrounding a dendrite. Here I want to investigate what happens in this space during intense activation of AMPA and NMDA.
My problem arises when I want my MOD files to communicate with my FH space. At first I defined my FH space as
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fh = rxd.Region(h.allsec(), nrn_region='o', geometry=rxd.Shell(lo=1.5, hi=2.0))
Then I tried scrapping my FH space and define a extracellular space with rxd.Extracellular, and with this modification the code worked as intended. I found a solution, but moving forwards it would be hard to use that solution with rxd.Extracellular
My main question is if it is even possible to treat a region 'o' as extracellular space and get MOD files to interact with it?