www.neuron.yale.edu

Posted: **Mon May 22, 2006 4:29 pm**

Folks,

I have found a strange behavior in CVode that I figured I would ask about. It seems like it might be a bug, but it's also quite possible I'm doing something wrong.

I have a six-compartment model, specified in the file lp-40.hoc, which uses a number of mechanisms that I've written. I've tested the mechanisms and the model in the NEURON GUI, so I'm reasonably confident they work properly.

However, if I start up NEURON (using nrniv, not nrngui), and execute

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load_file("lp-40.hoc")

objref cvode
cvode = new CVode(1)

finitialize(-50)
cvode.solve(2000)

things seem not to work properly. t is set to 1e+09 after running this, for instance, and all the model voltages seem to still be at -50 mV.

If, on the other hand, I do:

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load_file("lp-40.hoc")

objref cvode
cvode = new CVode()
cvode.active(1)

finitialize(-50)
cvode.solve(2000)

things seem to work fine. t is set to 2001.0082 afterwards, and the various compartments in my model seem to have reasonable values.

This seems to imply that doing

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cvode = new CVode(1)

leaves cvode (or the model, or something) in a different state than

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cvode = new CVode()
cvode.active(1)

does.

My version of NEURON is

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NEURON -- Version 5.8 2005-10-14 12:36:20 Main (88)

and I'm running it under Windows XP SP2 on a Dell Optiplex GX270.

Is this behavior odd, or am I doing something wrong?

Thank you,
Adam

Posted: **Tue May 23, 2006 6:04 am**

That is a bug. I'll decide in the next few days if it is a bug in the documentation and explicitly state that CVode starts out inactive, or else handle the "1" arg appropriately.

Posted: **Tue May 23, 2006 3:34 pm**

Michael,

Thanks for the quick response!

Adam

www.neuron.yale.edu

Strange CVode constructor behavior

Strange CVode constructor behavior

Thanks