cell types

Managing anatomically complex model cells with the CellBuilder. Importing morphometric data with NEURON's Import3D tool or Robert Cannon's CVAPP. Where to find detailed morphometric data.
Post Reply
Franzi

cell types

Post by Franzi »

Hello,

i'm looking for the following neuron cell types but i can't find them. I need 20 cells for every type with a data structure that neuron can handle with it. Can anybody help me and can give me a link for a cell archive or something like that.

rat somatosensory cortex: a) layer 3 aspiny stellate

cat visual cortex: b) layer 4 spiny stellate
c) layer 3 pyramid
d) layer 5 pyramid
Thank you!

Greetings, Franzi
csh
Posts: 52
Joined: Mon Feb 06, 2006 12:45 pm
Location: University College London
Contact:

Post by csh »

Hi,
Can anybody help me and can give me a link for a cell archive or something like that.
The ModelDB will probably help you:
http://senselab.med.yale.edu/senselab/ModelDB/

For instance, you will find a layer 3 aspiny neuron in this model:
http://senselab.med.yale.edu/senselab/m ... model=2488

Christoph
ted
Site Admin
Posts: 6300
Joined: Wed May 18, 2005 4:50 pm
Location: Yale University School of Medicine
Contact:

Caveats about morphometric data

Post by ted »

Be sure to read these papers, which discuss various artifacts that frequenly affect
morphometric data and can have serious adverse effects on simulation results:
Kaspirzhny AV, Gogan P, Horcholle-Bossavit G, Tyc-Dumont S.
Neuronal morphology data bases: morphological noise and assesment
of data quality. Network: Computation in Neural Systems 13:357-380, 2002.
Scorcioni, R., Lazarewicz, M.T., and Ascoli, G.A. Quantitative morphometry
of hippocampal pyramidal cells: differences between anatomical classes and
reconstructing laboratories. Journal of Comparative Neurology 473:177-193, 2004.
ted
Site Admin
Posts: 6300
Joined: Wed May 18, 2005 4:50 pm
Location: Yale University School of Medicine
Contact:

Re: cell types

Post by ted »

Franzi wrote:i'm looking for the following neuron cell types but i can't find them.
In the time since this question was first posted, NeuroMorpho.org has emerged as the first
place to look. Caveats about morphometric data, however, remain the same.
Post Reply