plot conductances through different channels
Posted: Wed Apr 29, 2015 4:27 am
I try to plot different currents through the different ion channels. I have the model from (Hemond et al., 2008) http://senselab.med.yale.edu/ModelDB/Sh ... del=101629
I tried current axis, and plot the soma ina(0.5) and ik(0.5). This works. But if I try to plot ica(0.5) nothing appears. Also not all currents are listed for every ion channel, but the conductances are. Below are the symbols one can choose to plot. For example Kdr,is not in the form i..(0.5). But it is in the form of gkdr_kdr(0.5). So I thought it is better to plot conductances instead of currents. I would like to plot this, and tried also grapher and state axis via the NEURON main menu --> Tools. But this did not succeed. I guess this is really a noob question, but I would really appreciate some help. Thank you in advance
g_pas(0.5)
gbar_KahpM95(0.5)
gbar_cagk(0.5)
gbar_km(0.5)
gbar_na3(0.5)
gcal_cal(0.5)
gcalbar_cal(0.5)
gcanbar_can(0.5)
gat_cat(0.5)
gcatbar_cat(0.5)
ggk_cal(0.5)
ghdbar_hd(0.5)
gka_kap(0.5)
gkabar_kap(0.5)
gkahp¬_kahpM95(0.5)
gkca_cagk(0.5)
gkd_kd(0.5)
gkdbar_kd(0.5)
gkdr_kdr(0.5)
gkdrbar¬¬_kdr(0.5)
h¬_can(0.5)
h_cat(0.5)
h_na3(0.5)
i_cacum(0.5)
i_cap(0.5)
i_hd(0.5)
i_pas(0.5)
ica(0.5)
ica¬_cal(0.5)
ica_can(0.5)
ica_cat(0.5)
ik(0.5)
ik_KahpM95(0.5)
ik_cagk(0.5)
ik_km(0.5)
ina(0.5[/size])
I tried current axis, and plot the soma ina(0.5) and ik(0.5). This works. But if I try to plot ica(0.5) nothing appears. Also not all currents are listed for every ion channel, but the conductances are. Below are the symbols one can choose to plot. For example Kdr,is not in the form i..(0.5). But it is in the form of gkdr_kdr(0.5). So I thought it is better to plot conductances instead of currents. I would like to plot this, and tried also grapher and state axis via the NEURON main menu --> Tools. But this did not succeed. I guess this is really a noob question, but I would really appreciate some help. Thank you in advance
g_pas(0.5)
gbar_KahpM95(0.5)
gbar_cagk(0.5)
gbar_km(0.5)
gbar_na3(0.5)
gcal_cal(0.5)
gcalbar_cal(0.5)
gcanbar_can(0.5)
gat_cat(0.5)
gcatbar_cat(0.5)
ggk_cal(0.5)
ghdbar_hd(0.5)
gka_kap(0.5)
gkabar_kap(0.5)
gkahp¬_kahpM95(0.5)
gkca_cagk(0.5)
gkd_kd(0.5)
gkdbar_kd(0.5)
gkdr_kdr(0.5)
gkdrbar¬¬_kdr(0.5)
h¬_can(0.5)
h_cat(0.5)
h_na3(0.5)
i_cacum(0.5)
i_cap(0.5)
i_hd(0.5)
i_pas(0.5)
ica(0.5)
ica¬_cal(0.5)
ica_can(0.5)
ica_cat(0.5)
ik(0.5)
ik_KahpM95(0.5)
ik_cagk(0.5)
ik_km(0.5)
ina(0.5[/size])