Another update:
I tried compiling NEURON without any graphical interface...
Code: Select all
./configure --prefix=`pwd` --with-mpi --without-x
When I came back an hour later, I found that the build process had failed with several errors. I'm including the last part of the output, but you can see that there are multiple places where loops get vectorized (should that happen?), warnings pop up about headers that are deprecated, and while the output here doesn't show it, I saw several places where warnings popped up about implicit function calls being made. All of these warnings look foreign to me - should they be coming up?
make[3]: Leaving directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src/ivoc'
Making all in nrncvode
make[3]: Entering directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src/nrncvode'
make all-am
make[4]: Entering directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src/nrncvode'
make[4]: Leaving directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src/nrncvode'
make[3]: Leaving directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src/nrncvode'
Making all in parallel
make[3]: Entering directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src/parallel'
make all-am
make[4]: Entering directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src/parallel'
make[4]: Leaving directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src/parallel'
make[3]: Leaving directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src/parallel'
Making all in nrniv
make[3]: Entering directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src/nrniv'
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT nrnmenu.lo -MD -MP -MF ".deps/nrnmenu.Tpo" -c -o nrnmenu.lo nrnmenu.cpp; \
then mv -f ".deps/nrnmenu.Tpo" ".deps/nrnmenu.Plo"; else rm -f ".deps/nrnmenu.Tpo"; exit 1; fi
mkdir .libs
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT nrnmenu.lo -MD -MP -MF .deps/nrnmenu.Tpo -c nrnmenu.cpp -fPIC -DPIC -o .libs/nrnmenu.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT shape.lo -MD -MP -MF ".deps/shape.Tpo" -c -o shape.lo shape.cpp; \
then mv -f ".deps/shape.Tpo" ".deps/shape.Plo"; else rm -f ".deps/shape.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT shape.lo -MD -MP -MF .deps/shape.Tpo -c shape.cpp -fPIC -DPIC -o .libs/shape.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT classreg.lo -MD -MP -MF ".deps/classreg.Tpo" -c -o classreg.lo classreg.cpp; \
then mv -f ".deps/classreg.Tpo" ".deps/classreg.Plo"; else rm -f ".deps/classreg.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT classreg.lo -MD -MP -MF .deps/classreg.Tpo -c classreg.cpp -fPIC -DPIC -o .libs/classreg.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT rotate3d.lo -MD -MP -MF ".deps/rotate3d.Tpo" -c -o rotate3d.lo rotate3d.cpp; \
then mv -f ".deps/rotate3d.Tpo" ".deps/rotate3d.Plo"; else rm -f ".deps/rotate3d.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT rotate3d.lo -MD -MP -MF .deps/rotate3d.Tpo -c rotate3d.cpp -fPIC -DPIC -o .libs/rotate3d.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT datapath.lo -MD -MP -MF ".deps/datapath.Tpo" -c -o datapath.lo datapath.cpp; \
then mv -f ".deps/datapath.Tpo" ".deps/datapath.Plo"; else rm -f ".deps/datapath.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT datapath.lo -MD -MP -MF .deps/datapath.Tpo -c datapath.cpp -fPIC -DPIC -o .libs/datapath.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT symdir.lo -MD -MP -MF ".deps/symdir.Tpo" -c -o symdir.lo symdir.cpp; \
then mv -f ".deps/symdir.Tpo" ".deps/symdir.Plo"; else rm -f ".deps/symdir.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT symdir.lo -MD -MP -MF .deps/symdir.Tpo -c symdir.cpp -fPIC -DPIC -o .libs/symdir.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
../ivoc/symdir.cpp(327): warning #269: invalid format string conversion
sprintf(tmp, "%.*%s%.*%s", s1.length(), s1.string(), s2.length(), s2.string());
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT spaceplt.lo -MD -MP -MF ".deps/spaceplt.Tpo" -c -o spaceplt.lo spaceplt.cpp; \
then mv -f ".deps/spaceplt.Tpo" ".deps/spaceplt.Plo"; else rm -f ".deps/spaceplt.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT spaceplt.lo -MD -MP -MF .deps/spaceplt.Tpo -c spaceplt.cpp -fPIC -DPIC -o .libs/spaceplt.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT shapeplt.lo -MD -MP -MF ".deps/shapeplt.Tpo" -c -o shapeplt.lo shapeplt.cpp; \
then mv -f ".deps/shapeplt.Tpo" ".deps/shapeplt.Plo"; else rm -f ".deps/shapeplt.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT shapeplt.lo -MD -MP -MF .deps/shapeplt.Tpo -c shapeplt.cpp -fPIC -DPIC -o .libs/shapeplt.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT ppshape.lo -MD -MP -MF ".deps/ppshape.Tpo" -c -o ppshape.lo ppshape.cpp; \
then mv -f ".deps/ppshape.Tpo" ".deps/ppshape.Plo"; else rm -f ".deps/ppshape.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT ppshape.lo -MD -MP -MF .deps/ppshape.Tpo -c ppshape.cpp -fPIC -DPIC -o .libs/ppshape.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT secbrows.lo -MD -MP -MF ".deps/secbrows.Tpo" -c -o secbrows.lo secbrows.cpp; \
then mv -f ".deps/secbrows.Tpo" ".deps/secbrows.Plo"; else rm -f ".deps/secbrows.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT secbrows.lo -MD -MP -MF .deps/secbrows.Tpo -c secbrows.cpp -fPIC -DPIC -o .libs/secbrows.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT ndatclas.lo -MD -MP -MF ".deps/ndatclas.Tpo" -c -o ndatclas.lo ndatclas.cpp; \
then mv -f ".deps/ndatclas.Tpo" ".deps/ndatclas.Plo"; else rm -f ".deps/ndatclas.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT ndatclas.lo -MD -MP -MF .deps/ndatclas.Tpo -c ndatclas.cpp -fPIC -DPIC -o .libs/ndatclas.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
ndatclas.cpp(178): (col. 6) remark: LOOP WAS VECTORIZED.
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT impedanc.lo -MD -MP -MF ".deps/impedanc.Tpo" -c -o impedanc.lo impedanc.cpp; \
then mv -f ".deps/impedanc.Tpo" ".deps/impedanc.Plo"; else rm -f ".deps/impedanc.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT impedanc.lo -MD -MP -MF .deps/impedanc.Tpo -c impedanc.cpp -fPIC -DPIC -o .libs/impedanc.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT savstate.lo -MD -MP -MF ".deps/savstate.Tpo" -c -o savstate.lo savstate.cpp; \
then mv -f ".deps/savstate.Tpo" ".deps/savstate.Plo"; else rm -f ".deps/savstate.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT savstate.lo -MD -MP -MF .deps/savstate.Tpo -c savstate.cpp -fPIC -DPIC -o .libs/savstate.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
savstate.cpp(842): (col. 3) remark: LOOP WAS VECTORIZED.
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT hocmech.lo -MD -MP -MF ".deps/hocmech.Tpo" -c -o hocmech.lo hocmech.cpp; \
then mv -f ".deps/hocmech.Tpo" ".deps/hocmech.Plo"; else rm -f ".deps/hocmech.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT hocmech.lo -MD -MP -MF .deps/hocmech.Tpo -c hocmech.cpp -fPIC -DPIC -o .libs/hocmech.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT ocjump.lo -MD -MP -MF ".deps/ocjump.Tpo" -c -o ocjump.lo ocjump.cpp; \
then mv -f ".deps/ocjump.Tpo" ".deps/ocjump.Plo"; else rm -f ".deps/ocjump.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT ocjump.lo -MD -MP -MF .deps/ocjump.Tpo -c ocjump.cpp -fPIC -DPIC -o .libs/ocjump.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT vrecord.lo -MD -MP -MF ".deps/vrecord.Tpo" -c -o vrecord.lo vrecord.cpp; \
then mv -f ".deps/vrecord.Tpo" ".deps/vrecord.Plo"; else rm -f ".deps/vrecord.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT vrecord.lo -MD -MP -MF .deps/vrecord.Tpo -c vrecord.cpp -fPIC -DPIC -o .libs/vrecord.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT cvodestb.lo -MD -MP -MF ".deps/cvodestb.Tpo" -c -o cvodestb.lo cvodestb.cpp; \
then mv -f ".deps/cvodestb.Tpo" ".deps/cvodestb.Plo"; else rm -f ".deps/cvodestb.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT cvodestb.lo -MD -MP -MF .deps/cvodestb.Tpo -c cvodestb.cpp -fPIC -DPIC -o .libs/cvodestb.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT occvode.lo -MD -MP -MF ".deps/occvode.Tpo" -c -o occvode.lo occvode.cpp; \
then mv -f ".deps/occvode.Tpo" ".deps/occvode.Plo"; else rm -f ".deps/occvode.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT occvode.lo -MD -MP -MF .deps/occvode.Tpo -c occvode.cpp -fPIC -DPIC -o .libs/occvode.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT cvodeobj.lo -MD -MP -MF ".deps/cvodeobj.Tpo" -c -o cvodeobj.lo cvodeobj.cpp; \
then mv -f ".deps/cvodeobj.Tpo" ".deps/cvodeobj.Plo"; else rm -f ".deps/cvodeobj.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT cvodeobj.lo -MD -MP -MF .deps/cvodeobj.Tpo -c cvodeobj.cpp -fPIC -DPIC -o .libs/cvodeobj.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
../nrncvode/cvodeobj.cpp(869): (col. 3) remark: LOOP WAS VECTORIZED.
../nrncvode/cvodeobj.cpp(854): (col. 3) remark: LOOP WAS VECTORIZED.
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT cvtrset.lo -MD -MP -MF ".deps/cvtrset.Tpo" -c -o cvtrset.lo cvtrset.cpp; \
then mv -f ".deps/cvtrset.Tpo" ".deps/cvtrset.Plo"; else rm -f ".deps/cvtrset.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT cvtrset.lo -MD -MP -MF .deps/cvtrset.Tpo -c cvtrset.cpp -fPIC -DPIC -o .libs/cvtrset.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT tqueue.lo -MD -MP -MF ".deps/tqueue.Tpo" -c -o tqueue.lo tqueue.cpp; \
then mv -f ".deps/tqueue.Tpo" ".deps/tqueue.Plo"; else rm -f ".deps/tqueue.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT tqueue.lo -MD -MP -MF .deps/tqueue.Tpo -c tqueue.cpp -fPIC -DPIC -o .libs/tqueue.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
if /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT netcvode.lo -MD -MP -MF ".deps/netcvode.Tpo" -c -o netcvode.lo netcvode.cpp; \
then mv -f ".deps/netcvode.Tpo" ".deps/netcvode.Plo"; else rm -f ".deps/netcvode.Tpo"; exit 1; fi
mpicxx -DHAVE_CONFIG_H -I. -I. -I../.. -I../.. -I../.. -I../../src/oc -I../../src/oc -I../../src/oc -I../../src/parallel -I../../src/nrnjava -I../../src/nrncvode -I../../src/ivos -I../../src/sundials -I../../src/nrnpython -I../../src/sundials -I../../src/sundials/shared -I../../src/nrncvode -I../../src/sparse13 -I../../src/gnu -I. -I../../src/ivoc -I../../src/nrnoc -I../../src/oc -I../../src/oc -I../../src/ivos -I../../src/parallel -I../../src/nrnmpi -DOOP=1 -DCABLE=1 -DUSECVODE=1 -DUSEMATRIX=1 -DUSEBBS=1 -g -O2 -MT netcvode.lo -MD -MP -MF .deps/netcvode.Tpo -c netcvode.cpp -fPIC -DPIC -o .libs/netcvode.o
/usr/include/c++/4.1.2/backward/backward_warning.h(32): warning #1224: #warning directive: This file includes at least one deprecated or antiquated header. Please consider using one of the 32 headers found in section 17.4.1.2 of the C++ standard. Examples include substituting the <X> header for the <X.h> header for C++ includes, or <iostream> instead of the deprecated header <iostream.h>. To disable this warning use -Wno-deprecated.
#warning This file includes at least one deprecated or antiquated header. \
^
../../src/gnu/d_vec.h(64): error: "map" has already been declared in the current scope
friend doubleVec& map(doubleMapper f, doubleVec & a);
^
../nrncvode/netcvode.cpp(4768): warning #181: argument is incompatible with corresponding format string conversion
fprintf(f, "%d\n", presyn_->hi_index_);
^
compilation aborted for netcvode.cpp (code 2)
make[3]: *** [netcvode.lo] Error 1
make[3]: Leaving directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src/nrniv'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/auto/rcf-proj3/tb/phendric/nrn70/nrn'
make: *** [all] Error 2
A little about the tools & the compiler:
Code: Select all
[phendric@hpc-login2 ~]$ gcc --version
gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-44)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
They're running gcc version 4.1.2.
Code: Select all
[phendric@hpc-login2 ~]$ mpicc --version
icc (ICC) 10.0 20070426
Copyright (C) 1985-2007 Intel Corporation. All rights reserved.
[phendric@hpc-login2 ~]$ which mpicc
/usr/usc/mpich/1.2.7..7/mx-intel/bin/mpicc
They're using MPICH v1.2.7 (so it's not MPICH2)...and it's an Intel-produced version (mx-intel).
And, finally, the OS version:
Code: Select all
[phendric@hpc-login2 ~]$ cat /etc/issue
CentOS release 5.3 (Final)
Kernel \r on an \m
Any suggestions about what the problem is & how to fix it?
Thanks,
Phillip