Conflict Between SubsetDomainIterator and NetWork Builder
Posted: Thu Feb 27, 2020 4:52 am
Hello,
I am having a few problems with SubsetDomainIterator when implementing it into cells that I use for a network build, I would appreciate if anyone could give me some pointers on what might be going wrong.
I have implemented a SubsetDomain iterator to change g_pas as a function of path length from the root (the soma), this seems to work fine, the model initializes correctly to the top level with continuous create with no errors, and when checking values of individual segments g_pas appears to change as expected. However, when I use this CellBuilder model to create a network with one artificial cell sending presynaptic events to it and tick create I get the following error:
I can recreate this error with a simple ball and stick model by following the same steps as above. I am running NEURON on Mac OS and have yet to have a chance to test this on any other operating system to test if this is a problem with the NEURON install/Mac.
I appreciate any guidance anyone can give on this matter
I am having a few problems with SubsetDomainIterator when implementing it into cells that I use for a network build, I would appreciate if anyone could give me some pointers on what might be going wrong.
I have implemented a SubsetDomain iterator to change g_pas as a function of path length from the root (the soma), this seems to work fine, the model initializes correctly to the top level with continuous create with no errors, and when checking values of individual segments g_pas appears to change as expected. However, when I use this CellBuilder model to create a network with one artificial cell sending presynaptic events to it and tick create I get the following error:
Code: Select all
oc>/Applications/NEURON-7.7/nrn/x86_64/bin/nrniv: SubsetDomainIterator is not a template
in /tmp/nrnLyc69M near line 12111
primary_apical_list_x = new SubsetDomainIterator(primary_apical_list, 0, 0, 0)
^
xopen("/tmp/nrnLyc69M")
NetGUI[0].execute("xopen("/tm...")
NetGUI[0].create1()
I appreciate any guidance anyone can give on this matter