Search found 5794 matches

by ted
Sun May 22, 2005 12:00 am
Forum: ModelDB and other online sources of models
Topic: Invitation to model authors to use ModelDB
Replies: 0
Views: 16840

Invitation to model authors to use ModelDB

Michael Hines <michael.hines@yale.edu> wrote> As of 5/20/2005, source code for 162 published models is freely available from ModelDB http://senselab.med.yale.edu/senselab/modeldb/ ModelDB is a searchable database for convenient storage, viewing, and retrieval of source code for published computation...
by ted
Sat May 21, 2005 11:48 pm
Forum: Adding new mechanisms and functions to NEURON
Topic: Modeling calcium diffusion
Replies: 0
Views: 3494

Modeling calcium diffusion

A NEURON user wrote: > I was trying to find some documentation regarding calcium diffusion > in a multi-compartment model. I went through some example models in > ModelDB, but couldn't understand how exactly it works. Is there any > link/chapter that I can go through that'll help me understand the >...
by ted
Sat May 21, 2005 11:45 pm
Forum: Adding new mechanisms and functions to NEURON
Topic: Typos in "Expanding NEURON's repertoire . . . " ?
Replies: 0
Views: 3568

Typos in "Expanding NEURON's repertoire . . . " ?

A reader wrote: > I've been reading the NMODL manual and have come across > some typos. I wonder if there is a place where people keep track > of typos and errors in the NEURON documentation. We try to fix errors that we discover, or that NEURON users report, but some documents are "frozen in time" ...
by ted
Sat May 21, 2005 11:25 pm
Forum: The GUI
Topic: Using a Phase Plane graph to plot V vs. I
Replies: 0
Views: 6054

Using a Phase Plane graph to plot V vs. I

A user wrote: > I am having trouble finding information on how to make an IV plot (ie. > during a run I want to plot I on the x-axis and V on the y-axis). Is > there an easy way to do this? I tried doing this through the grapher but > it doesn't seem to be working out. Use a Phase Plane graph. NEURO...
by ted
Fri May 20, 2005 9:15 pm
Forum: NEURON Announcements
Topic: NEURON 5.7.159
Replies: 0
Views: 14595

NEURON 5.7.159

On 4/22/2005 Michael Hines <michael.hines@yale.edu> wrote: Version 5.7.159 of NEURON is now available from http://www.neuron.yale.edu/neuron/install/install.html Some sticklers for detail may notice that the WWW site simply calls it 5.7, but will then draw reassurance from the fact that 159 appears ...
by ted
Fri May 20, 2005 1:51 pm
Forum: The GUI
Topic: Movie Run bug?
Replies: 1
Views: 6514

Movie Run bug?

On 5/20/2005 Michael Hines <michael.hines@yale.edu> wrote: The session file is incomplete. Add load_file("movierun.hoc") after the first line of your demo.hoc file. The movierun panel is not controlled by an object so there is no good way to add this to the session file and so I may have to load it ...
by ted
Fri May 20, 2005 1:50 pm
Forum: The GUI
Topic: Movie Run bug?
Replies: 1
Views: 6514

Movie Run bug?

I was using the GUI to set up a demo that involved the Movie Run tool (otherwise it executes too fast to see what happens). When everything was working properly, I did File / save session, which I thought would be able to recreate all of the graphical stuff (RunControl etc.). Later, when I retrieved...
by ted
Fri May 20, 2005 10:25 am
Forum: NEURON Announcements
Topic: NEURON 5.7.159 ModelDB autolaunch under mswin
Replies: 0
Views: 14091

NEURON 5.7.159 ModelDB autolaunch under mswin

On 5/2/2005 Michael Hines <michael.hines@yale.edu> wrote: Autolaunching ModelDB models under mswin with NEURON version 5.7.159 and Internet Explorer fails due to mishandling spaces in file paths. This problem can be fixed by uninstalling the old version and re-installing http://www.neuron.yale.edu/f...
by ted
Fri May 20, 2005 10:15 am
Forum: Other questions
Topic: Symptom: calling run() changes dt
Replies: 0
Views: 3140

Symptom: calling run() changes dt

A NEURON user reported the following: > I set the dt to 0.1, when I use run() in a prcedure written by me > the progrm writes me 'dt changed' and use dt=0.025. > What is the best way to make it run with dt=0.1 ? > (I'm not using the RunControl Panel) On 5/4/2005 Michael Hines <michael.hines@yale.edu...
by ted
Fri May 20, 2005 9:58 am
Forum: UNIX/Linux
Topic: Installing v. 5.7.159 under Debian
Replies: 2
Views: 4973

Installing v. 5.7.159 under Debian

On 5/20/2005 Michael Hines <michael.hines@yale.edu> wrote: > The problem of building NEURON from the sources with a configuration > option --with-iv has been fixed. You can get the new tar.gz file from > http://www.neuron.yale.edu/ftp/neuron/versions/alpha/nrn-5.8.7.tar.gz > Don't worry about the ve...
by ted
Thu May 19, 2005 10:11 pm
Forum: Adding new mechanisms and functions to NEURON
Topic: Where to learn about mod files and NMODL
Replies: 0
Views: 28020

Where to learn about mod files and NMODL

mod files contain code in NMODL (NEURON Model Description Language), which is used to add new biophysical mechanisms to NEURON. For general information about mod files go to the FAQ list http://www.neuron.yale.edu/neuron/faq/general-questions and look at these items Where can I find examples of mod ...
by ted
Thu May 19, 2005 10:02 pm
Forum: Specific models
Topic: Cerebellar Purkinje cell
Replies: 1
Views: 16180

Cerebellar Purkinje cell

On 5/16/2005 Sheng-Chun Yen <shengchy@usc.edu> wrote: > I am very interested in if NEURON can simulate Purkinje cell of > cerebelum. Was there any research about it? On 5/16/2005 Ted Carnevale <ted.carnevale@yale.edu> wrote: > It can. Whether anyone has built such a model I don't know. > Have you ch...
by ted
Thu May 19, 2005 9:43 pm
Forum: Adding new mechanisms and functions to NEURON
Topic: How to cite NMODL
Replies: 0
Views: 3295

How to cite NMODL

On 5/9/2005 Carl Gold <carlg@caltech.edu> wrote: > I have used the cadifus mechanism of calcium accumulation with > longitudinal and radial diffusion in my model. What paper/book should I > reference? Would that be Expanding NEURON's Repertoire of Mechanisms > with NMODL? That would do. The complete...
by ted
Thu May 19, 2005 6:28 pm
Forum: UNIX/Linux
Topic: Installing v. 5.7.159 under Debian
Replies: 2
Views: 4973

Installing v. 5.7.159 under Debian

On 5/19/2005 Quan.Zou@iaf.cnrs-gif.fr wrote: > I just compiled the lastest neuron under debian 2.4.xx kernel > --with-iv supported. > > But, when I try to "configure --without-iv or --without-x, and make" > produce errors. It complains that some header files such as > tformsetter.h, window.h and act...
by ted
Thu May 19, 2005 9:29 am
Forum: The GUI
Topic: Increment used by spinner
Replies: 1
Views: 4685

Increment used by spinner

On 5/17/2005 Michael Moffitt <MMoffitt@advancedbionics.com> wrote: > Is there a way I can set the step size used by widget buttons? > In particular, the widget button used with 'xvalue' in an 'xpanel.' You mean the increment size used by the "spinner" widget (button with paired up & down arrows)? Ri...