Search found 44 matches
- Thu Feb 25, 2021 1:23 pm
- Forum: NEURON + Python
- Topic: hoc file is not a template
- Replies: 6
- Views: 5135
Re: hoc file is not a template
Maybe you meant to compile the mod files in this 39948 entry and then run your code? (The is not a template error is misleading since having Izhi2003a as a suffix in a mod file is a possible solution to resolving the error). https://senselab.med.yale.edu/ModelDB/showmodel?model=39948&file=/izhik...
- Tue Jun 23, 2020 2:16 pm
- Forum: Adding new mechanisms and functions to NEURON
- Topic: ampanmda mod file working with AlphaSynapse
- Replies: 7
- Views: 13184
Re: ampanmda mod file working with AlphaSynapse
True that NetStim doesn't control the shape of the EPSP just the delivery of events via a listening NetCon. The ampanmda.mod looks like it controls the shape of the EPSP with ampatau and Alpha and Beta. You can also try the simpler exp2syn whose shape can be controlled by setting it's rise and fall ...
- Fri Jun 05, 2020 4:13 pm
- Forum: Adding new mechanisms and functions to NEURON
- Topic: ampanmda mod file working with AlphaSynapse
- Replies: 7
- Views: 13184
Re: ampanmda mod file working with AlphaSynapse
The AmpaNmda is not connected to the onset of the AlphaSynapse. The AmpaNmda needs to be turned on with an event. Here is an example where the default start time of a NetStim (ns.start) triggers an event through the NetCon to turn the synapse on. NetStim's and NetCon's can be used when there is no n...
- Fri Jun 05, 2020 10:59 am
- Forum: Adding new mechanisms and functions to NEURON
- Topic: ampanmda mod file working with AlphaSynapse
- Replies: 7
- Views: 13184
Re: ampanmda mod file working with AlphaSynapse
Please mention how you are stimulating the new synapse. Presumably you setup a NetCon that connects it to a NetStim? Please post the code that you are using.
- Thu Sep 14, 2017 10:42 am
- Forum: ModelDB and other online sources of models
- Topic: Wang, Buzsaki 1996's model running issue
- Replies: 11
- Views: 49075
Re: Wang, Buzsaki 1996's model running issue
The model in modeldb has been updated with a vecst.mod file RBett sent. Thanks RBett!
- Wed Sep 13, 2017 11:37 am
- Forum: ModelDB and other online sources of models
- Topic: Wang, Buzsaki 1996's model running issue
- Replies: 11
- Views: 49075
Re: Wang, Buzsaki 1996's model running issue
Yes it is worth putting in ModelDB. Please email me the code (will send separate email to you) and I will upload it!
- Mon Jul 03, 2017 10:36 am
- Forum: ModelDB and other online sources of models
- Topic: couldn't find model on modeldb with accession number 151685
- Replies: 7
- Views: 35037
Re: couldn't find model on modeldb with accession number 151
I am pleased to report that the model has been made available:
Current Dipole in Laminar Neocortex (Lee et al. 2013)
http://modeldb.yale.edu/151685
Current Dipole in Laminar Neocortex (Lee et al. 2013)
http://modeldb.yale.edu/151685
- Thu Jun 15, 2017 4:11 pm
- Forum: ModelDB and other online sources of models
- Topic: couldn't find model on modeldb with accession number 151685
- Replies: 7
- Views: 35037
- Thu Jun 08, 2017 4:06 pm
- Forum: ModelDB and other online sources of models
- Topic: couldn't find model on modeldb with accession number 151685
- Replies: 7
- Views: 35037
Re: couldn't find model on modeldb with accession 151685
Shane Lee apologized for the oversight and is looking for the files.
- Sun Jun 04, 2017 9:48 am
- Forum: ModelDB and other online sources of models
- Topic: couldn't find model on modeldb with accession number 151685
- Replies: 7
- Views: 35037
Re: couldn't find model on modeldb with accession 151685
Thank you for your post. I will contact the authors and request for them to contribute their model.
- Thu Aug 21, 2014 7:35 pm
- Forum: ModelDB and other online sources of models
- Topic: Wang, Buzsaki 1996's model running issue
- Replies: 11
- Views: 49075
Re: Wang, Buzsaki 1996's model running issue
I updated the model in modeldb to run on mswin as well as unix/linux. Please download and try this new version:
http://senselab.med.yale.edu/modeldb/Sh ... odel=26997
http://senselab.med.yale.edu/modeldb/Sh ... odel=26997
- Thu Aug 21, 2014 11:10 am
- Forum: ModelDB and other online sources of models
- Topic: Wang, Buzsaki 1996's model running issue
- Replies: 11
- Views: 49075
Re: Wang, Buzsaki 1996's model running issue
Changing the include file from sys/time.h to just time.h got past this mknrndll error. However there were other errors with the drand48 not being found. I found another model in ModelDB that has some clues about how to convert this to windows from linux: https://senselab.med.yale.edu/modeldb/ShowMod...
- Wed Aug 20, 2014 1:41 pm
- Forum: ModelDB and other online sources of models
- Topic: Wang, Buzsaki 1996's model running issue
- Replies: 11
- Views: 49075
Re: Wang, Buzsaki 1996's model running issue
Start with the mosinit.hoc file instead if that is OK.
I will help you get the model running if the mosinit.hoc doesn't have the part you would like. 1)Which platform (mswin, mac os x, unix/linux) and which 2) version of NEURON (7.3, alpha, hg) are you using?
I will help you get the model running if the mosinit.hoc doesn't have the part you would like. 1)Which platform (mswin, mac os x, unix/linux) and which 2) version of NEURON (7.3, alpha, hg) are you using?
- Mon May 06, 2013 11:31 am
- Forum: UNIX/Linux
- Topic: iv-17 installation problems
- Replies: 6
- Views: 13826
Re: iv-17 installation problems
On an old 10.04LTS ubuntu I found that installing libkaya-ncurses-dev allowed the ncurses, curses, or termcap error message to go away after installing the other packages mentioned above.
- Fri Mar 08, 2013 2:01 pm
- Forum: UNIX/Linux
- Topic: nrnivmodl compiling in Linux
- Replies: 8
- Views: 28991
Re: nrnivmodl compiling in Linux
In ubuntu it is convenient to use synaptic as a package manager. If you don't have it you can add it with a command like sudo apt-get install synaptic When I used synaptic to discover what was missing (I typed ncurses in the synaptic search box when i received the ncurses missing message) I cured th...