Search found 8 matches

by drunja40
Tue Nov 30, 2021 8:22 am
Forum: General questions and discussions about computational neuroscience
Topic: Interpreting neural response
Replies: 1
Views: 189

Interpreting neural response

I simulated a fiber response to extracellular stimulation steered by a sinus wave: - first, the optimal stimulation threshold (max amplitude of a sinus wave in mA) was found by stimulating with different amplitudes (binary search) until the chosen amplitude value in mA produces exactly one AP record...
by drunja40
Tue Nov 30, 2021 8:09 am
Forum: General questions and discussions about computational neuroscience
Topic: Upcoming conferences on peripheral nerve stimulation
Replies: 0
Views: 145

Upcoming conferences on peripheral nerve stimulation

Does anyone know of recent\upcoming conferences, workshops, events.... related to neural stimulation, in particular for peripheral nerves? I found this one: https://www.grc.org/neuroelectronic-interfaces-conference/2022/ Preferably offline, of course, in order to actually meet people and communicate...
by drunja40
Wed Oct 13, 2021 8:43 am
Forum: NEURON + Python
Topic: Error running NEURON with embedded Python
Replies: 3
Views: 2931

Re: Error running NEURON with embedded Python

I fixed the problem by properly setting all environmental variables:

Path should include:
C:\Program Files\Python37
C:\Program Files\Python37\Scripts
c:\nrn\bin
c:\nrn\mingw\usr\bin

PYTHONPATH:
c:\nrn\lib\python

NEURONHOME:
c:\nrn
by drunja40
Wed Oct 13, 2021 6:32 am
Forum: NEURON + Python
Topic: Error running NEURON with embedded Python
Replies: 3
Views: 2931

Re: Error running NEURON with embedded Python

Was this somehow resolved? I still get it with NEURON 7.6.7 and Python 3.7.9 on Windows 10
by drunja40
Fri Sep 03, 2021 10:27 am
Forum: Other questions
Topic: Implementing extracellular potential from sinusoidal sources
Replies: 5
Views: 492

Re: Implementing extracellular potential from sinusoidal sources

Thanks again for your reply, after diving a bit more into the code and your answer I have better understanding. I also made that script run on AzureML cloud, which speeds up the simulations by a lot. Now I can more effectively experiment with adjusting parameters and altering the code. Primarily I a...
by drunja40
Thu Aug 26, 2021 12:40 pm
Forum: Other questions
Topic: Implementing extracellular potential from sinusoidal sources
Replies: 5
Views: 492

Re: Implementing extracellular potential from sinusoidal sources

thanks a lot for such an extensive answer with links. It will take time to go step by step through every statement, but I already can follow without much details and, at least, trace how other files are used during the python script execution.
by drunja40
Wed Aug 25, 2021 11:04 am
Forum: Other questions
Topic: Implementing extracellular potential from sinusoidal sources
Replies: 5
Views: 492

Re: Implementing extracellular potential from sinusoidal sources

ted wrote: Wed Aug 25, 2021 10:56 am Name of the file that contains "Full model code:" ?
The file name is AxonActivity.py
download link https://github.com/mirzakhalili/Mirzakh ... stems-2020
by drunja40
Tue Aug 24, 2021 2:08 pm
Forum: Other questions
Topic: Implementing extracellular potential from sinusoidal sources
Replies: 5
Views: 492

Implementing extracellular potential from sinusoidal sources

I am only few weeks into the subject and started with literature review, in particular this paper https://www.sciencedirect.com/science/article/pii/S2405471220303720 , because it is very relevant to the topic of Interferential current stimulation and also has source code, which is great to start lea...