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Hi, I have a problem with running NEURON in parallel on HPC. I have configured the NEURON 7.6 with '−−with−paranrn'. On the clusters, there are two MPI modules(impi and ompi) and I have MPI installed under my virtual environment. According to https://www.neuron.yale.edu/phpBB/viewtopic.php?t=1711 , ...

Hi, Two months ago, I implemented the two-compartment model (Ladenbauer 2019) in Neuron. Here is the link to the last post regarding the implementation: https://www.neuron.yale.edu/phpBB/viewtopic.php?f=18&t=4370 . The model uses its own variables vs and vd for the transmembrane potentials at so...

Hi Ted,

I found the issue in my code and fixed it. "WATCH (vs>vt) 2" should be "WATCH (vs>vth) 2". Thanks.

Hi Ted, Thank you so much for the help! I managed to solve the issue. Vs resets to Vr (0 mV) after passing VT (10mV). Now I have some problems with setting Vs to Vth (20 mV) before resetting. I suspect there is something wrong with my NET_RECEIVE block. I set Vs to Vth after passing the VT but it wo...

NEURON { POINT_PROCESS twocomps RANGE cs, vs, gi, gs, ge, vd, gd, cd, deltaT, delta, E, E0, vt, vth, vr, iion, is,id } UNITS { (mV) = (millivolt) (mA) = (milliamp) (S) = (siemens) } PARAMETER { cs = 9.8868E-12 (F) cd = 2.8879E-11 (F) gi = 1.2126E-9 (S) gs = 2.4824E-10 (S) ge = 3.2956E-10 (S) gd = 8...

I am interested in writing the two-compartment neuron model (Weak electric fields promote resonance in neuronal spiking activity: Analytical results from two-compartment cell and network models,2019) in NEURON. The link: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006974 ...

Hi,

I want to model the synaptic activation in Neuron. I have one neuron connecting a second neuron with AMPA synapse using NetCon. Is there a way to activate the synaptic connection without making the presynaptic cell fire? Can I just feed a spiking event to NetCon? Thank you.

I have constructed a MOD to model leaky integrate-and-fire neuron including HH-like currents from the paper "Modeling the Effects of Transcranial Magnetic Stimulation on Cortical Circuits". The link to the paper is: https://www.physiology.org/doi/full/10.1152/jn.01230.2004?url_ver=Z39.88-2...