www.neuron.yale.edu

We were able to get it working with a pip install of the newest version. It correctly points to the correct python and shows appropriate speedups when evoked under mpi. The culprit turned out to be that python was not installed with the shared library. I don't know if the more tedious install of the...

I have been running into an issue where nrniv -python is using a different version of python than what it was (allegedly) configured with The configuration script I have been using is ./configure --without-x --prefix=$HOME/nrnmpi3.8 --with-paranrn --with-nrnpython=$HOME/.localpython/bin/python3.8 --...

I was able to resolve it by setting NEURONHOME=$HOME/neuron/share, deleting the x86_64 folder, then recompiling

I recently installed neuron 7.7 on a cluster with a local install and get this error when attempting to compile mod files with default parameters such as PI and FARADAY. error: _nrnunit_use_legacy_ undeclared (first use in this function) #define PI _nrnunit_PI[_nrnunit_use_legacy_] I do not get this...

Right now I am using command line piping to write the output of simulations to a file - is there a way to make it so the only thing neuron prints to stdout are from print or printf commands? Right now my code returns loading membrane mechanisms from /home/~~~~~/kcadelay/x86_64/.libs/libnrnmech.so 1 ...