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Annik

Great, got it to work. Thanks very much!

Annik

Annik

The second route is more appealing to me. Do you have tips on how to proceed in this direction? I haven't looked at mayavi (using btmorph right now), but I will get some more information about that.

Annik

This is perhaps an odd question, as it's less about how to make a model work in Neuron and more about how Neuron works. My apologies if this belongs in another section. I have used the geometry of a cell from the modelDB, which was presented as a hoc file. I set up my model to record several variabl...

Annik

After renaming the directory to MCM instead, I'm still getting the same message. Any other reasons this might be occurring?

Annik

Hi, I'm getting an error message I don't understand. /home/t/tyrell/annik/Multi Compartment Model/x86_64/special: line 13: 5798 Killed "${NRNIV}" -dll "/home/t/tyrell/annik/Multi Compartment Model/x86_64/.libs/libnrnmech.so" "$@" What is the problem/how should I trouble...

Annik

Thanks for your quick reply. I have removed the ion management statements and the problem persists. In mod files using Cl I have appropriate statements i.e. USEION cl READ icl, ecl, clo WRITE cli VALENCE -1 (and as you mentioned this mod file contains a kinetic block to solve for cli in terms of ion...

Annik

Hi, I have built a multicompartment model to observe how Cl is regulated following GABAergic input. I have written the code such that the user may specify where GABAergic synapses are inserted into the cell (at the soma, in proximal dendrites or distal dendrites) using a prompt window which then cal...

Annik

Got it. The code below works:

Code: Select all

	proc read_TC() {
		TC_file_loc.chooser("", "Choose a File to Read", "*.txt", "Execute")
		if (TC_file_loc.chooser()) {
			strdef str
			str = TC_file_loc.getname()
			TC_read.ropen(str)
		}
	}

Annik

Great, I got a button to bring up a window to choose a file using the following code (as per the programmer's reference): objref TC_f TC_f = new File() proc read_TC() { TC_f.chooser("r", "Select a File to Read", "*.txt", "Execute") if (TC_f.chooser()) { str = ...

Annik

Hi, I was wondering if it is possible to create a field editor like xvalue, but which takes a string input like a file name. I'm trying to create a prompt window which asks the user to specify a binary file to be read in before running the simulation. Is such a thing possible?

Thanks,
Annik

Annik

Found it -- used VBox().

Annik

I was wondering if there is a way to specify the size of a panel created with xpanel? That is, setting the size as one would with saving a window

Code: Select all

save_window = new Graph(0)
save_window.size(0,tstop,-90, -50)
{save_window.view(0, -90, tstop, 40, 1020, 30, 300.48, 200.32)}

Thanks

Annik

I'm somewhat new to this, so I was only using a binary file because I was using vwrite. I'm certainly not set on it. How can I get neuron to record data in another file type?

Annik

It is indeed a binary file. If I run the python code with def read_list_header(self): sec_list_name = self.file.read(4) self.file.seek(4,1) num_sections = struct.unpack('d', self.file.read(8))[0] self.file.seek(8,1) return (sec_list_name, num_sections) (sec_name, num_sections) = self.read_list_subhe...

Annik

Sorry, I should have given more information. The hoc code continues as follows: //output somatic section subheader runfile.printf("%s", "soma") runfile.printf("%d", 1) for i = 0,soma_listv.count()-1 { for j = 0,soma_listv.o(i).count()-1 { soma_listv.o(i).o(j).vwrite(run...

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Search found 27 matches

Re: swc to hoc conversion

Re: swc to hoc conversion

swc to hoc conversion

Re: Unknown error

Unknown error

Re: Issues with ion valence?

Issues with ion valence?

Re: xvalue for strings?

Re: xvalue for strings?

xvalue for strings?

Re: Controlling the size of a panel

Controlling the size of a panel

Re: Having python read from a NEURON binary file

Re: Having python read from a NEURON binary file

Re: Having python read from a NEURON binary file