www.neuron.yale.edu

I am trying to run the neuron model publised by :

Vijayalakshmi Santhakumar, Ildiko Aradi and Ivan Soltesz
Role of Mossy Fiber Sprouting and Mossy Cell Loss in
Hyperexcitability:A Network Model of the Dentate Gyrus Incorporating
Cell Types and Axonal Topography
J Neurophysiol 93: 437-453, 2005.

I am running across an error :

/usr/local/nrn/i686/bin/nrniv: GranuleCell : a template cannot be defined in
RI10sp.hoc near line 34
begintemplate GranuleCell
^
xopen("RI10sp.hoc")
execute1("{xopen("RI10sp.hoc")}')
load_file("RI10sp.hoc")

This error appears in the neuron command shell when I initiate the model by clicking on [Run 10% sprouting network].
I have compiled .mod files with (nrnivmodl) and during the compliation it says [: make: warning: clock skew detected. Your build may be incomplete.] as Ive read on the forum this is because of the clock on my operating system. Can someone guide me in the right path to fix this error.

The computer I am using is running on:Operating System: kernel version 2.6.6 with Orion Drivers, based on Fedora Core 2

NSLUTB wrote:I am running across an error

That's a real error message. Did you launch the program by typing
nrngui mosinit.hoc
at the system command prompt?
Immediately after you click, or after it stops spewing all those numbers? (program should
capture them to vectors and print to a file after model setup is complete; would be much
faster).

warning: clock skew detected.

This only matters if you need to recompile the mod files, after having already compiled
them previously. The fix is simple, as noted here:
https://www.neuron.yale.edu/phpBB2/viewtopic.php?t=1091
just delete the *.c and *.o files first, to ensure that recompilation is complete.
Try doing that and see what happens.

The computer I am using is running on:Operating System: kernel version 2.6.6 with Orion Drivers, based on Fedora Core 2

Might work fine under CentOS 5 (RHEL 5 with some cosmetic changes, but free
as in "free beer"). "Might" because I killed it after a couple of minutes of watching the
numbers fly by during its model setup phase.