Re: SWC files
Posted: Fri Feb 13, 2015 4:37 am
Great now almost (problem with record voltage) everything work fine
problem is that I make vector
vrec1 = h.Vector()
and I want to record voltage from cell1 but like you write the cells has got morphology so i want to record from for example (In future i want to record from soma, dend and axon) soma
but always I have RuntimeError: hoc error
how to fix this problem - what I am doing wrong ?
I download nrn-7.3.i686-pc-cygwin-setup.exe but how can I upgrade in Python this (I mean I work in python and I have pyNEURON 7.2.536.16 what to do to have pyNEURON 7.3 - from where I can download (i try to find in internet but there is only this nrn-7.3.i686-pc-cygwin-setup.exe))
The reaction-diffusion (rxd) module was introduced in NEURON 7.3; you're running 7.2. If you don't have an extensive Python setup that you need to preserve, on Windows I'd recommend using the cygwin version; the NEURON download page is here; the direct link for the 32-bit cygwin version for Windows is: http://www.neuron.yale.edu/ftp/neuron/v ... -setup.exe.
Thank you
problem is that I make vector
vrec1 = h.Vector()
and I want to record voltage from cell1 but like you write the cells has got morphology so i want to record from for example (In future i want to record from soma, dend and axon) soma
but always I have RuntimeError: hoc error
how to fix this problem - what I am doing wrong ?
Code: Select all
Traceback (most recent call last):
File "C:\Users\Właściciel\Desktop\komórki\hh.py", line 248, in <module>
vrec1.record(cell1.soma[0])
RuntimeError: hoc error
>>> ================================ RESTART ================================
Traceback (most recent call last):
File "C:\Users\Właściciel\Desktop\komórki\hh.py", line 248, in <module>
vrec1.record(cell1.soma)
RuntimeError: hoc error
>>> ================================ RESTART ================================
Traceback (most recent call last):
File "C:\Users\Właściciel\Desktop\komórki\hh.py", line 248, in <module>
vrec1.record(0.5, cell1.soma)
RuntimeError: hoc error
>>> ================================ RESTART ================================
Traceback (most recent call last):
File "C:\Users\Właściciel\Desktop\komórki\hh.py", line 248, in <module>
vrec1.record(0.5, cell1.soma[0])
RuntimeError: hoc error
The reaction-diffusion (rxd) module was introduced in NEURON 7.3; you're running 7.2. If you don't have an extensive Python setup that you need to preserve, on Windows I'd recommend using the cygwin version; the NEURON download page is here; the direct link for the 32-bit cygwin version for Windows is: http://www.neuron.yale.edu/ftp/neuron/v ... -setup.exe.
Thank you