libtool segmentation fault when installing Neuron in x86_64

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jaambros
Posts: 29
Joined: Tue Oct 04, 2005 3:29 pm
Location: Ohio University

libtool segmentation fault when installing Neuron in x86_64

Post by jaambros »

Hi,

I'm trying to install neuron with no-gui in a Linux x86_64 machine for which I have no root access.

Code: Select all

$ uname -a
Linux bale-login 2.6.18-8.1.8.el5 #1 SMP Mon Jun 25 17:06:07 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux
$ tar xzf nrn-6.0.tar.gz
$ mv nrn-6.0 nrn
$ cd nrn
$ ./configure --prefix=`pwd` --without-iv
$ make
$ make install
Configure and make work without problem (except for a number of warnings of the "cast to pointer from integer" type).
However, make install has 4 Segmentation fault errors:

Code: Select all

/usr/bin/install -c .libs/libnrnmpi.lai /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib/libnrnmpi.laPATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib
../../libtool: line 6156: 20853 Segmentation fault      PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib

/usr/bin/install -c .libs/liboc.lai /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib/liboc.la PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib
../../libtool: line 6156: 20918 Segmentation fault      PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib

/usr/bin/install -c .libs/libsundials.lai /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib/libsundials.la PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib
../../libtool: line 6156: 21416 Segmentation fault      PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib

/usr/bin/install -c .libs/libneuron_gnu.lai /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib/libneuron_gnu.la
PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib
../../libtool: line 6156: 21546 Segmentation fault      PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib

Any help resolving this would be greatly appreciated.

Thanks,
Jose Ambros-Ingerson
Ohio University
hines
Site Admin
Posts: 1603
Joined: Wed May 18, 2005 3:32 pm

Post by hines »

Does the problem continue to exist if you replace --without-iv by the option
--without-x
jaambros
Posts: 29
Joined: Tue Oct 04, 2005 3:29 pm
Location: Ohio University

Post by jaambros »

I get similar errors with make install:

Code: Select all

/usr/bin/install -c .libs/liboc.lai /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib/liboc.la
PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib
../../libtool: line 6156: 29570 Segmentation fault      PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib

/usr/bin/install -c .libs/libocxt.lai /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib/libocxt.la
PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib
../../libtool: line 6156: 29629 Segmentation fault      PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib

/usr/bin/install -c .libs/libneuron_gnu.lai /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib/libneuron_gnu.la
PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib
../../libtool: line 6156: 30198 Segmentation fault      PATH="$PATH:/sbin" ldconfig -n /home/ohu0256/Software/src/Neuron/bale/nrn/x86_64/lib
hines
Site Admin
Posts: 1603
Joined: Wed May 18, 2005 3:32 pm

Post by hines »

please send me the
nrn/libtool
script that was generated by configure
to michael.hines@yale.edu
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