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Gap junction support - parallel simulation?

Posted: Wed Jan 24, 2018 10:18 pm
by tmc
I was hoping to clarify - does the current support for gap junctions in NetPyNE (ie tut_gap.py) allow simulation in parallel (with MPI)?

Re: Gap junction support - parallel simulation?

Posted: Mon Feb 05, 2018 5:01 pm
by salvadord
Yes, it did originally, but I just tested it and seems some change introduced in a later version has broken mpi support -- I will post a message here once I fix it.

thanks for your message

Re: Gap junction support - parallel simulation?

Posted: Tue Feb 06, 2018 12:11 pm
by tmc
Thanks for the reply. Good to know, I'll keep listening here for the update.

Re: Gap junction support - parallel simulation?

Posted: Thu Feb 08, 2018 12:41 pm
by salvadord
I fixed the bug that was preventing gap junctions to work with multiple cores. It will be released in the next version but you can try it now using the 'development' version of NetPyNE -- see instructions here: http://neurosimlab.org/netpyne/install. ... nt-version

let me know if it works or you still have issues
thanks