Gap junction support - parallel simulation?

A Python package that facilitates development and use of models of biological neural networks

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tmc
Posts: 2
Joined: Fri Nov 17, 2017 12:49 pm

Gap junction support - parallel simulation?

Post by tmc » Wed Jan 24, 2018 10:18 pm

I was hoping to clarify - does the current support for gap junctions in NetPyNE (ie tut_gap.py) allow simulation in parallel (with MPI)?

salvadord
Posts: 69
Joined: Tue Aug 18, 2015 3:49 pm

Re: Gap junction support - parallel simulation?

Post by salvadord » Mon Feb 05, 2018 5:01 pm

Yes, it did originally, but I just tested it and seems some change introduced in a later version has broken mpi support -- I will post a message here once I fix it.

thanks for your message

tmc
Posts: 2
Joined: Fri Nov 17, 2017 12:49 pm

Re: Gap junction support - parallel simulation?

Post by tmc » Tue Feb 06, 2018 12:11 pm

Thanks for the reply. Good to know, I'll keep listening here for the update.

salvadord
Posts: 69
Joined: Tue Aug 18, 2015 3:49 pm

Re: Gap junction support - parallel simulation?

Post by salvadord » Thu Feb 08, 2018 12:41 pm

I fixed the bug that was preventing gap junctions to work with multiple cores. It will be released in the next version but you can try it now using the 'development' version of NetPyNE -- see instructions here: http://neurosimlab.org/netpyne/install. ... nt-version

let me know if it works or you still have issues
thanks

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