A Python package that facilitates development and use of models of biological neural networks

Moderator: tom_morse

Posts: 80
Joined: Tue Aug 18, 2015 3:49 pm


Post by salvadord » Sat Apr 27, 2019 2:36 pm

# Version 0.9.2 ... tag/v0.9.2

- Support for saving simulation at intervals

- Improved Python cell template import so can read section names from a Python list or dict of sections

- Fixed replicability issue across different number of cores when using 'connList' connectivity rules

- Improved speed performance of 'connList' connectivity rules

- Updated RxD calcium buffering example

- Added netClamp example to re-simulate activity of single cell from network data

- Added support for recording and plotting variable time step

- Replaced spectrogram FFT method with Morlet wavelet method

- Updated installation instructions

- Added 'fontSize' argument to several plots

- Fixed issue completing batches in Python 3

- Fixed bug saving evolutionary optimization batch output file

- Fixed bug in plotShape()

- Fixed bug in plotSpikeStats()

- Fixed bug loading files with colons

- Fixed issue sorting raster by population and y coord

Posts: 80
Joined: Tue Aug 18, 2015 3:49 pm


Post by salvadord » Sun Jul 21, 2019 5:25 pm

# Version 0.9.3 ... ag/v.0.9.3

- Improved conversion from SONATA format, including 300 biophys cell example

- Added saveCellConns, pt3dRelativeToCellLocation and invertedYCoord cfg options

- Added lineWidth as argument of plotRatePSD() and plotLFP()

- Modified plotLFP and plotRatePSD to use Morlet wavelet for PSD calculation

- Added lineWidth argument to some raster and LFP plots

- Added shuffling test to granger causality functions

- Fixed bug plotting traces with one fig per trace

- Fixed bug in granger functions - required conversion to int

- Fixed bug in plotShape when cells sections not available

- Return meaningful cell info via 'repr' and 'str' for pointCell, compartCell

- Fixed spelling typos in documentation

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