Why I cannot use the GUI
Posted: Wed Oct 26, 2011 3:30 am
After I click the insert. It shows "No accessed section: Can't start an insert.
It shows" oc>for all print secname()ted wrote:This happens when there is no default section.
At the oc> prompt in NEURON's xterm, type the command
forall print secname()
What is NEURON's reply to this command?
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forall print secname()
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for all . . .
Thank you Ted, I have fixed the problem. Although I still cannot insert, I can use the GUI to build. That is good enough for me. I have a question that whether I can simulate the signal in a field such as magnetic field.ted wrote:The command to try isnotCode: Select all
forall print secname()
Also, tell me whatCode: Select all
for all . . .
print secname()
returns.
Well, it's not good enough for me, and if you don't mind, I'd like to identify whatever the problem is and make sure it has been fixed.yk890406 wrote:Although I still cannot insert, I can use the GUI to build. That is good enough for me.
Code: Select all
print secname()
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forall print secname()
Alon Korngreen published a paper recently that describes how he did this--search PubMed for Korngreen and it will be one of the first 3 or 4 hits.I have a question that whether I can simulate the signal in a field such as magnetic field.
Yes. What do you mean by electric synapse? Ephaptic interaction, or gap junction?yk890406 wrote:And can I simulate electric synapse with neuron?
Sorry, I do not the term of it. It means there gap 2-3 nm between two nerve cells. The cell pass the signal without Neurotransmitter but with ions directly.ted wrote:Yes. What do you mean by electric synapse? Ephaptic interaction, or gap junction?yk890406 wrote:And can I simulate electric synapse with neuron?
This confirms the fact that there is no default section. Many of NEURON's GUI tools assume that a default section exists, and will generate error messages if there is no default section.yk890406 wrote:Code: Select all
oc>print secname() nrniv: Section access unspecified near line 3 print secname() ^ secname( )
This shows that no sections exist. Not even one. How are you specifying the properties of your model cell--with a CellBuilder, or with hoc code?Code: Select all
oc>forall print secname() oc>
That's called a gap junction. With NEURON, gap junctions can be implemented in two different ways. One way is with a pair of point processes. The other way is with the LinearMechanism class. ModelDB contains examples of both approaches, but it's probably best to use the LinearMechanism class. Here's an example of thatyk890406 wrote:Sorry, I do not the term of it. It means there gap 2-3 nm between two nerve cells. The cell pass the signal without Neurotransmitter but with ions directly.ted wrote:What do you mean by electric synapse? Ephaptic interaction, or gap junction?
I use CellBuilder.ted wrote:[quote="yk890406This shows that no sections exist. Not even one. How are you specifying the properties of your model cell--with a CellBuilder, or with hoc code?Code: Select all
oc>forall print secname() oc>
Sure, I did not click on the "Continuous Create" button. Thank you!ted wrote:Then I am forced to conclude that you have not worked through the CellBuilder tutorials at
http://www.neuron.yale.edu/neuron/docs
or maybe you didn't notice the part that said that the CellBuilder doesn't actually create any sections until you click on the "Continuous Create" button.