NeuronVisio: a GTK2-NEURON UI with 3D capabilities

When Python is the interpreter, what is a good
design for the interface to the basic NEURON
concepts.

Moderator: hines

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mattions
Posts: 65
Joined: Tue Jul 15, 2008 11:21 am
Location: EMBL-EBI Cambridge UK

NeuronVisio: a GTK2-NEURON UI with 3D capabilities

Post by mattions » Wed Jul 01, 2009 8:40 am

Dear community,

I have released the 0.1.0 http://github.com/mattions/neuronvisio/tarball/0.1.0 version of NeuronVisio http://mattions.github.com/neuronvisio/ a GTK2 User Interface with 3D capabilities for Neuron.

Features
  • * 3D visualization of the model with the possibility to change it runtime
    * Creation of vectors to record any variable present in the section
    * Pylab integration to plot directly the result of the simulation
    * Exploration of the timecourse of any variable among time using a color coded scale in the 3d representation
    * the GUI runs in its own thread so it’s possible to use the console to modify/interact with the model.
You can visualize (in theory) any NEURON models.
Let me know what you think, if you find any bug http://github.com/mattions/neuronvisio/ ... labels/bug or you want any feauture added http://github.com/mattions/neuronvisio/ ... ls/feature

The code is on github http://github.com/mattions/neuronvisio/ if you want to have a look.

You can get the development version via git:

git clone git://github.com/mattions/neuronvisio.git

mattions
Posts: 65
Joined: Tue Jul 15, 2008 11:21 am
Location: EMBL-EBI Cambridge UK

Re: NeuronVisio: a GTK2-NEURON UI with 3D capabilities

Post by mattions » Mon Jul 06, 2009 8:25 am

Version 0.2.0 out

you can select colors and an initial info tab has been added.
http://mattions.github.com/neuronvisio/news.html

Enjoy :D

mattions
Posts: 65
Joined: Tue Jul 15, 2008 11:21 am
Location: EMBL-EBI Cambridge UK

Re: NeuronVisio: a GTK2-NEURON UI with 3D capabilities

Post by mattions » Tue Jul 14, 2009 8:29 am

version 0.3.0 out

Some BUGs fixed, better (and more responsive) handling of the animation.

http://mattions.github.com/neuronvisio/news.html
http://github.com/mattions/neuronvisio/tarball/0.3.0

mattions
Posts: 65
Joined: Tue Jul 15, 2008 11:21 am
Location: EMBL-EBI Cambridge UK

Re: NeuronVisio: a GTK2-NEURON UI with 3D capabilities

Post by mattions » Tue Nov 24, 2009 12:31 pm

version 0.3.5 out

A lot of bug fixes and new features.

Improved doc

http://mattions.github.com/neuronvisio/

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