New nrnpython compiling problem
Posted: Thu Aug 14, 2008 12:00 pm
I have just downloaded the new version of neuron 6.2. that promises significant improvements in the python interface.
But when I try to install it as usual:
./configure --prefix=/home/armin --with-iv=/home/armin --with-nrnpython --with-numpy
the configuration process stops and tells:
Python binary found (/home/armin/bin/python)
checking nrnpython configuration... get_python_version() '2.5'
get_python_inc(1) '/home/armin/include/python2.5'
get_config_var('LIBS') '-lpthread -ldl -lutil'
get_config_var('LINKFORSHARED') '-Xlinker -export-dynamic'
get_config_var('LIBDIR') '/home/armin/lib'
checking numpy availability... checking if python include files and libraries work... configure: error: could not run a test that used the python library.
Examine config.log to see error details. Something wrong with
PYLIB=-L/home/armin/lib -lpython2.5 -lpthread -ldl -lutil -Xlinker -export-dynamic -R/home/armin/lib
or
PYLIBDIR=/home/armin/lib
or
PYLIBLINK=-L/home/armin/lib -lpython2.5 -lpthread -ldl -lutil
or
PYINCDIR=/home/armin/include/python2.5
python is installed into /home/armin and works fine with numpy..
I have played around with the library path, but I have yet not been able to start compiling..
I think one should just tell it not to start this test (that seems to be the new part of this version)..
Thank you very much for your help,
Armin
But when I try to install it as usual:
./configure --prefix=/home/armin --with-iv=/home/armin --with-nrnpython --with-numpy
the configuration process stops and tells:
Python binary found (/home/armin/bin/python)
checking nrnpython configuration... get_python_version() '2.5'
get_python_inc(1) '/home/armin/include/python2.5'
get_config_var('LIBS') '-lpthread -ldl -lutil'
get_config_var('LINKFORSHARED') '-Xlinker -export-dynamic'
get_config_var('LIBDIR') '/home/armin/lib'
checking numpy availability... checking if python include files and libraries work... configure: error: could not run a test that used the python library.
Examine config.log to see error details. Something wrong with
PYLIB=-L/home/armin/lib -lpython2.5 -lpthread -ldl -lutil -Xlinker -export-dynamic -R/home/armin/lib
or
PYLIBDIR=/home/armin/lib
or
PYLIBLINK=-L/home/armin/lib -lpython2.5 -lpthread -ldl -lutil
or
PYINCDIR=/home/armin/include/python2.5
python is installed into /home/armin and works fine with numpy..
I have played around with the library path, but I have yet not been able to start compiling..
I think one should just tell it not to start this test (that seems to be the new part of this version)..
Thank you very much for your help,
Armin