Reaction-diffusion in NEURON

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Reaction-diffusion is included with NEURON 7.3

Last post by ted « Thu Apr 11, 2013 10:41 am

by ted » Thu Apr 11, 2013 10:41 am

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7379 Views

Last post by ted
Thu Apr 11, 2013 10:41 am
Introduction and request for suggestions

Last post by Keivan « Thu Aug 08, 2013 10:48 am
Replies: 5
by wwlytton » Fri Feb 13, 2009 7:58 am

5 Replies

11060 Views

Last post by Keivan
Thu Aug 08, 2013 10:48 am

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Running pde solver more than once

Last post by ramcdougal « Mon Mar 01, 2021 3:20 pm
Replies: 6
by ren » Mon Jun 19, 2017 4:56 am

6 Replies

11032 Views

Last post by ramcdougal
Mon Mar 01, 2021 3:20 pm
Issue with larger and more equations in Reaction

Last post by adamjhn « Mon Nov 16, 2020 10:18 am
Replies: 1
by jetlim » Tue Oct 27, 2020 4:22 pm

1 Replies

403 Views

Last post by adamjhn
Mon Nov 16, 2020 10:18 am
Help measuring/plotting the cytoplasmic Ca flux (nM/s) as function of Ca concentration

Last post by ilariac « Wed Oct 14, 2020 4:00 am
Replies: 2
by ilariac » Mon Oct 12, 2020 3:47 am

2 Replies

388 Views

Last post by ilariac
Wed Oct 14, 2020 4:00 am
Connecting rxd to custom mechanism where custom mechanism models production/secretion

Last post by adamjhn « Tue Jul 14, 2020 9:12 am
Replies: 8
by tiki » Fri Jul 10, 2020 8:41 am

8 Replies

1088 Views

Last post by adamjhn
Tue Jul 14, 2020 9:12 am
Using NEURON to model a system of endocrine cells

Last post by Robert Claar « Fri Jul 03, 2020 8:21 am
Replies: 2
by Robert Claar » Tue Jun 30, 2020 2:58 pm

2 Replies

624 Views

Last post by Robert Claar
Fri Jul 03, 2020 8:21 am
rxd.plugins interface in Neuron 7.7

Last post by davidsterratt « Tue Jun 30, 2020 11:38 am
Replies: 2
by davidsterratt » Thu Jun 25, 2020 4:57 am

2 Replies

563 Views

Last post by davidsterratt
Tue Jun 30, 2020 11:38 am
Problem initializing with rxd.Rate

Last post by mandy « Thu Apr 23, 2020 3:16 pm
Replies: 2
by mandy » Wed Apr 22, 2020 2:50 pm

2 Replies

1106 Views

Last post by mandy
Thu Apr 23, 2020 3:16 pm
MultiCompartmentReaction Section List Mismatch

Last post by adamjhn « Mon Apr 13, 2020 12:57 pm
Replies: 1
by amerg » Fri Apr 10, 2020 4:17 pm

1 Replies

727 Views

Last post by adamjhn
Mon Apr 13, 2020 12:57 pm
Cell membrane with PMCA pump

Last post by adamjhn « Fri Mar 06, 2020 12:24 pm
Replies: 3
by ziemek » Fri Jan 03, 2020 10:56 am

3 Replies

1148 Views

Last post by adamjhn
Fri Mar 06, 2020 12:24 pm
Multicomp model, ECS, pumps and strange concentrations

Last post by ramcdougal « Fri Feb 28, 2020 10:50 am
Replies: 3
by bremen » Thu Feb 27, 2020 10:17 am

3 Replies

844 Views

Last post by ramcdougal
Fri Feb 28, 2020 10:50 am
Making a Nucleus

Last post by adamjhn « Tue Feb 25, 2020 10:25 am
Replies: 1
by RBJ » Sat Nov 30, 2019 9:36 am

1 Replies

895 Views

Last post by adamjhn
Tue Feb 25, 2020 10:25 am
length scales and SparseEfficiencyWarning

Last post by bschneiders « Wed Feb 05, 2020 3:29 pm
Replies: 5
by bschneiders » Fri Nov 08, 2019 7:02 pm

5 Replies

2141 Views

Last post by bschneiders
Wed Feb 05, 2020 3:29 pm
Checking the units

Last post by ziemek « Fri Jan 03, 2020 10:53 am
Replies: 2
by ziemek » Fri Jan 03, 2020 9:11 am

2 Replies

742 Views

Last post by ziemek
Fri Jan 03, 2020 10:53 am
The best practice of Ca2+ pumps on the cell membrane implemented in RxD model

Last post by adamjhn « Fri Jan 03, 2020 9:45 am
Replies: 3
by ziemek » Wed Dec 18, 2019 7:10 am

3 Replies

960 Views

Last post by adamjhn
Fri Jan 03, 2020 9:45 am
rxd, crxd and dx

Last post by ziemek « Wed Dec 11, 2019 5:28 am
Replies: 2
by ziemek » Tue Dec 10, 2019 3:11 pm

2 Replies

1262 Views

Last post by ziemek
Wed Dec 11, 2019 5:28 am
The equilibrium between the FS and external

Last post by ted « Thu Dec 05, 2019 11:21 pm
Replies: 20
by ahmed.hamzah » Sun Oct 20, 2019 8:42 pm
1

2
20 Replies

4014 Views

Last post by ted
Thu Dec 05, 2019 11:21 pm
Node.d (Diffusion) for Node3D objects

Last post by RBJ « Sat Nov 30, 2019 9:29 am
Replies: 2
by RBJ » Sat Oct 26, 2019 8:20 am

2 Replies

1035 Views

Last post by RBJ
Sat Nov 30, 2019 9:29 am
Tracking External and Internal Na & K concentration

Last post by ted « Wed Nov 06, 2019 10:02 pm
Replies: 2
by ahmed.hamzah » Tue Nov 05, 2019 4:24 pm

2 Replies

938 Views

Last post by ted
Wed Nov 06, 2019 10:02 pm
NEURON 7.7.1 RxD issue

Last post by bremen « Mon Oct 07, 2019 2:52 pm
Replies: 2
by bremen » Thu Oct 03, 2019 8:45 am

2 Replies

1580 Views

Last post by bremen
Mon Oct 07, 2019 2:52 pm
Using setpointer() and RXD concentrations

Last post by adamjhn « Tue Aug 27, 2019 11:48 am
Replies: 1
by amerg » Mon Aug 26, 2019 6:16 pm

1 Replies

1193 Views

Last post by adamjhn
Tue Aug 27, 2019 11:48 am
Using include_flux() properly

Last post by adamjhn « Wed Aug 21, 2019 4:43 pm
Replies: 1
by amerg » Tue Aug 20, 2019 8:42 pm

1 Replies

3100 Views

Last post by adamjhn
Wed Aug 21, 2019 4:43 pm
Parameter and MultiCompartmentReaction Error

Last post by adamjhn « Thu Aug 15, 2019 5:25 pm
Replies: 1
by amerg » Thu Aug 01, 2019 3:42 pm

1 Replies

984 Views

Last post by adamjhn
Thu Aug 15, 2019 5:25 pm
Modelling a channel with multiple markov states

Last post by SurG « Wed Aug 14, 2019 1:34 pm
Replies: 7
by SurG » Sun Jul 07, 2019 1:58 am

7 Replies

2266 Views

Last post by SurG
Wed Aug 14, 2019 1:34 pm
decay reactions

Last post by adamjhn « Wed Aug 14, 2019 10:25 am
Replies: 1
by Tuoma » Wed Aug 14, 2019 5:14 am

1 Replies

925 Views

Last post by adamjhn
Wed Aug 14, 2019 10:25 am
Altering Total Concentration During a Simulation

Last post by Darshan « Sun Aug 04, 2019 1:07 pm
Replies: 2
by amerg » Thu Aug 01, 2019 3:09 pm

2 Replies

1257 Views

Last post by Darshan
Sun Aug 04, 2019 1:07 pm
basic questions on RxD

Last post by adamjhn « Mon Jul 08, 2019 10:35 am
Replies: 7
by Tuoma » Tue Apr 24, 2018 10:10 am

7 Replies

4733 Views

Last post by adamjhn
Mon Jul 08, 2019 10:35 am
Questions about Calcium Waves in RxD

Last post by yuzhou « Tue May 07, 2019 8:55 pm
Replies: 2
by yuzhou » Fri May 03, 2019 10:35 am

2 Replies

1760 Views

Last post by yuzhou
Tue May 07, 2019 8:55 pm
Reactions only when concentration above a certain limit?

Last post by adamjhn « Mon Mar 18, 2019 11:24 am
Replies: 1
by bremen » Sat Mar 16, 2019 12:06 pm

1 Replies

2532 Views

Last post by adamjhn
Mon Mar 18, 2019 11:24 am
diffusion intracellular->extracellular->intracellular

Last post by bremen « Sun Mar 03, 2019 8:17 am
Replies: 7
by bremen » Thu Feb 07, 2019 11:25 am

7 Replies

2745 Views

Last post by bremen
Sun Mar 03, 2019 8:17 am
USEION in mod files for RxD species I created

Last post by ted « Fri Mar 01, 2019 5:52 pm
Replies: 3
by bschneiders » Fri Mar 01, 2019 9:48 am

3 Replies

1933 Views

Last post by ted
Fri Mar 01, 2019 5:52 pm
RXD lower concentration limit?

Last post by RBJ « Mon Feb 18, 2019 5:13 pm
Replies: 2
by RBJ » Sat Feb 16, 2019 6:29 am

2 Replies

1492 Views

Last post by RBJ
Mon Feb 18, 2019 5:13 pm
Unexpected 3D behaviour

Last post by RBJ « Mon Feb 04, 2019 4:19 pm
Replies: 2
by RBJ » Thu Jan 31, 2019 3:24 pm

2 Replies

1686 Views

Last post by RBJ
Mon Feb 04, 2019 4:19 pm
3D Dimensional RXD/CRXD

Last post by RBJ « Thu Jan 31, 2019 2:59 pm
Replies: 4
by RBJ » Fri Jan 25, 2019 2:51 pm

4 Replies

2728 Views

Last post by RBJ
Thu Jan 31, 2019 2:59 pm
Different reaction rates in different sections

Last post by RBJ « Tue Jan 22, 2019 11:00 am
Replies: 3
by RBJ » Mon Jan 21, 2019 8:20 am

3 Replies

1683 Views

Last post by RBJ
Tue Jan 22, 2019 11:00 am
updating Species and Rates inputs

Last post by bschneiders « Fri Jan 18, 2019 3:08 pm
Replies: 2
by bschneiders » Wed Jan 16, 2019 2:41 pm

2 Replies

1553 Views

Last post by bschneiders
Fri Jan 18, 2019 3:08 pm
Reaction-Diffusion in HOC

Last post by Darshan « Sat Nov 17, 2018 2:28 am
Replies: 5
by ramcdougal » Fri Oct 27, 2017 10:09 am

5 Replies

19095 Views

Last post by Darshan
Sat Nov 17, 2018 2:28 am
maximum length for the name of a species?

Last post by Tuoma « Fri Nov 16, 2018 6:07 am
Replies: 2
by Tuoma » Wed Nov 14, 2018 10:59 am

2 Replies

1965 Views

Last post by Tuoma
Fri Nov 16, 2018 6:07 am
Add term to RxD solution.

Last post by ramcdougal « Fri Sep 14, 2018 10:59 am
Replies: 2
by ahmed.hamzah » Fri Sep 07, 2018 5:43 pm

2 Replies

2870 Views

Last post by ramcdougal
Fri Sep 14, 2018 10:59 am
RxD in Neuron

Last post by ahmed.hamzah « Mon Aug 27, 2018 7:55 pm
Replies: 3
by ahmed.hamzah » Fri Aug 24, 2018 5:08 pm

3 Replies

3190 Views

Last post by ahmed.hamzah
Mon Aug 27, 2018 7:55 pm
different results from NEURON version 7.5 and NEURON version 7.4

Last post by adamjhn « Mon Jul 23, 2018 3:38 pm
Replies: 1
by yz398 » Mon Jul 23, 2018 2:29 pm

1 Replies

2051 Views

Last post by adamjhn
Mon Jul 23, 2018 3:38 pm
Custom reaction rates

Last post by ramcdougal « Mon Jun 11, 2018 11:28 am
Replies: 1
by Tuoma » Mon Jun 11, 2018 11:25 am

1 Replies

2505 Views

Last post by ramcdougal
Mon Jun 11, 2018 11:28 am
Different species parameters for different regions

Last post by bschneiders « Thu Jun 07, 2018 6:02 pm
Replies: 7
by bschneiders » Thu Feb 15, 2018 1:18 pm

7 Replies

4951 Views

Last post by bschneiders
Thu Jun 07, 2018 6:02 pm
Negative concentrations

Last post by ramcdougal « Thu May 10, 2018 5:45 pm
Replies: 5
by Tuoma » Mon May 07, 2018 10:36 am

5 Replies

4023 Views

Last post by ramcdougal
Thu May 10, 2018 5:45 pm
Radial diffusion using RxD?

Last post by bschneiders « Thu Apr 12, 2018 12:46 pm
Replies: 2
by bschneiders » Tue Apr 10, 2018 12:33 pm

2 Replies

2431 Views

Last post by bschneiders
Thu Apr 12, 2018 12:46 pm
Is there a model that handles Signaling Pathways in rxd?

Last post by adamjhn « Thu Oct 05, 2017 6:21 pm
Replies: 1
by vogdb » Wed Sep 06, 2017 11:13 am

1 Replies

10397 Views

Last post by adamjhn
Thu Oct 05, 2017 6:21 pm
Reaction Not Proceeding

Last post by npatel « Tue Aug 01, 2017 8:42 am
Replies: 3
by npatel » Mon Jul 31, 2017 11:13 am

3 Replies

11057 Views

Last post by npatel
Tue Aug 01, 2017 8:42 am
Modeling extracellular space and a plasma membrane

Last post by ramcdougal « Wed Apr 26, 2017 3:10 pm
Replies: 3
by bschneiders » Tue Apr 04, 2017 5:34 pm

3 Replies

11214 Views

Last post by ramcdougal
Wed Apr 26, 2017 3:10 pm
Absolute tolerance scale in RxD

Last post by ramcdougal « Thu Apr 20, 2017 3:53 pm
Replies: 1
by bschneiders » Wed Apr 19, 2017 12:25 pm

1 Replies

9217 Views

Last post by ramcdougal
Thu Apr 20, 2017 3:53 pm
Basic modelling question

Last post by SurG « Thu Sep 08, 2016 5:49 am
Replies: 7
by stephanmg » Wed Jun 04, 2014 11:45 am

7 Replies

15708 Views

Last post by SurG
Thu Sep 08, 2016 5:49 am
Intracellular potassium depletion

Last post by yuzhou « Tue Sep 06, 2016 11:10 am
Replies: 2
by yuzhou » Sun Sep 04, 2016 12:26 am

2 Replies

10724 Views

Last post by yuzhou
Tue Sep 06, 2016 11:10 am

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