Data sharing

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ModelDB and other online sources of models
Where are they and what do they have?
Moderator: tom_morse
Topics: 19

19 Topics

84 Posts

Last post Re: couldn't run model from m…
by ted View the latest post
Wed Feb 21, 2024 1:18 pm
Specific models
Discussions of particular models.
Moderator: tom_morse
Topics: 52

52 Topics

176 Posts

Last post Re: v_init in McIntyre axon m…
by ted View the latest post
Mon Apr 24, 2023 1:22 pm
Policies and procedures
What do funding agencies and journals say about data sharing, especially of models? What mechanisms for sharing models exist or are in the works?
Moderator: tom_morse
Topics: 2

2 Topics

4 Posts

Last post Re: Attributing code from use…
by bagnall View the latest post
Mon May 10, 2010 11:18 pm

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Last post

couldn't run model from modelDB

Last post by ted « Wed Feb 21, 2024 1:18 pm
Replies: 1
by m_nadimi » Wed Feb 21, 2024 12:18 pm

1 Replies

72512 Views

Last post by ted
Wed Feb 21, 2024 1:18 pm
v_init in McIntyre axon model

Last post by ted « Mon Apr 24, 2023 1:22 pm
Replies: 3
by tonyclick » Sun Apr 23, 2023 8:46 am

3 Replies

110099 Views

Last post by ted
Mon Apr 24, 2023 1:22 pm
Typesetting error in nap.mod affecting multiple ModelDB entries

Last post by Danko Georgiev « Sun Feb 12, 2023 5:40 am

by Danko Georgiev » Sun Feb 12, 2023 5:40 am

0 Replies

98677 Views

Last post by Danko Georgiev
Sun Feb 12, 2023 5:40 am
Adding multiple synaptic connections to the two-compartment model (Ladenbauer 2019)

Last post by ted « Tue Mar 23, 2021 11:00 am
Replies: 1
by harrisonZ » Mon Mar 22, 2021 6:45 pm

1 Replies

56790 Views

Last post by ted
Tue Mar 23, 2021 11:00 am
How to model spike and reset condition Ladenbauer 2019

Last post by harrisonZ « Wed Jan 27, 2021 5:53 pm
Replies: 5
by harrisonZ » Mon Jan 25, 2021 11:34 pm

5 Replies

59339 Views

Last post by harrisonZ
Wed Jan 27, 2021 5:53 pm
The acceptable range of channels

Last post by ted « Sat Jul 18, 2020 10:21 am
Replies: 1
by Han » Fri Jul 17, 2020 7:40 pm

1 Replies

50313 Views

Last post by ted
Sat Jul 18, 2020 10:21 am
Model 3808 can't use Create Your Own\Single Cell

Last post by ted « Sat Sep 28, 2019 9:23 pm
Replies: 1
by Sun Xiaoqing » Sat Sep 28, 2019 10:53 am

1 Replies

79586 Views

Last post by ted
Sat Sep 28, 2019 9:23 pm
Model 135839 error issue

Last post by ted « Sat Sep 28, 2019 9:18 pm
Replies: 1
by Sun Xiaoqing » Fri Sep 27, 2019 11:26 pm

1 Replies

51105 Views

Last post by ted
Sat Sep 28, 2019 9:18 pm
How to add Na+ inactivation to Courtemanche et al Am J Physiol 1998 275:H301

Last post by ted « Wed Jul 31, 2019 10:48 pm
Replies: 1
by doh » Wed Jul 31, 2019 3:32 pm

1 Replies

56837 Views

Last post by ted
Wed Jul 31, 2019 10:48 pm
e_pas in Poirazi2003 CA1 pyr cell model

Last post by ted « Wed Jul 17, 2019 10:16 am
Replies: 1
by analkumar2 » Tue Jul 16, 2019 3:00 pm

1 Replies

52170 Views

Last post by ted
Wed Jul 17, 2019 10:16 am
Destexhe kinetic scheme for I_h

Last post by pascal « Wed May 29, 2019 7:21 pm
Replies: 2
by pascal » Wed May 29, 2019 5:55 pm

2 Replies

53761 Views

Last post by pascal
Wed May 29, 2019 7:21 pm
Plot rate and time constant

Last post by arpit « Sat Feb 23, 2019 2:34 am

by arpit » Sat Feb 23, 2019 2:34 am

0 Replies

61688 Views

Last post by arpit
Sat Feb 23, 2019 2:34 am
Single-compartment deterministic oscillating cell model?

Last post by ted « Tue Dec 18, 2018 12:11 pm
Replies: 2
by Yaeger » Mon Dec 17, 2018 8:17 pm

2 Replies

55434 Views

Last post by ted
Tue Dec 18, 2018 12:11 pm
Weird "trap" function in Bazhenov 2002 model

Last post by pascal « Thu Oct 04, 2018 11:02 pm
Replies: 4
by pascal » Wed Oct 03, 2018 11:27 am

4 Replies

61084 Views

Last post by pascal
Thu Oct 04, 2018 11:02 pm
No capacitance in cortical cells from Bazhenov (2002)

Last post by pascal « Tue Sep 25, 2018 4:29 pm
Replies: 2
by pascal » Tue Sep 25, 2018 12:23 pm

2 Replies

53802 Views

Last post by pascal
Tue Sep 25, 2018 4:29 pm
Neuron morphologies with LFPy python module

Last post by ted « Sun Jul 08, 2018 1:06 pm
Replies: 1
by mildan » Tue Jul 03, 2018 5:56 am

1 Replies

55165 Views

Last post by ted
Sun Jul 08, 2018 1:06 pm
Stimulation in ephaptic example

Last post by mcapllonchj « Fri Oct 20, 2017 7:25 am
Replies: 4
by mcapllonchj » Fri Oct 13, 2017 11:28 am

4 Replies

72340 Views

Last post by mcapllonchj
Fri Oct 20, 2017 7:25 am
MRG model & bipolar stimulation - asymmetric response?

Last post by ted « Wed Sep 27, 2017 9:15 am
Replies: 1
by Shamsie » Tue Sep 26, 2017 11:33 am

1 Replies

63365 Views

Last post by ted
Wed Sep 27, 2017 9:15 am
Wang, Buzsaki 1996's model running issue

Last post by tom_morse « Thu Sep 14, 2017 10:42 am
Replies: 11
by breakwave922 » Wed Aug 20, 2014 1:30 pm

11 Replies

98621 Views

Last post by tom_morse
Thu Sep 14, 2017 10:42 am
couldn't find model on modeldb with accession number 151685

Last post by breakwave922 « Mon Jul 03, 2017 2:41 pm
Replies: 7
by breakwave922 » Sat Jun 03, 2017 4:06 pm

7 Replies

76982 Views

Last post by breakwave922
Mon Jul 03, 2017 2:41 pm
Bezaire/Raikov/Soltesz CA1 network model

Last post by neuromau « Thu Jun 15, 2017 1:29 pm

by neuromau » Thu Jun 15, 2017 1:29 pm

0 Replies

66601 Views

Last post by neuromau
Thu Jun 15, 2017 1:29 pm
Pinsky & Rinzel version of Traub model

Last post by ted « Tue Mar 28, 2017 12:24 pm
Replies: 1
by pdennevis » Tue Mar 28, 2017 6:29 am

1 Replies

62803 Views

Last post by ted
Tue Mar 28, 2017 12:24 pm
NEURON implementation of Compte et al 2003 pyramidal cell

Last post by rth « Thu Feb 09, 2017 9:57 pm

by rth » Thu Feb 09, 2017 9:57 pm

0 Replies

66891 Views

Last post by rth
Thu Feb 09, 2017 9:57 pm
modeldb inaccessible?

Last post by ted « Mon Apr 04, 2016 12:38 pm
Replies: 1
by aaronmil » Mon Apr 04, 2016 10:56 am

1 Replies

62277 Views

Last post by ted
Mon Apr 04, 2016 12:38 pm
CaR tauh faster than taum?

Last post by ted « Thu Sep 24, 2015 4:36 pm

by ted » Thu Sep 24, 2015 4:36 pm

0 Replies

67966 Views

Last post by ted
Thu Sep 24, 2015 4:36 pm
Questions about Brunel's model in 2000

Last post by breakwave922 « Thu Sep 03, 2015 4:35 pm

by breakwave922 » Thu Sep 03, 2015 4:35 pm

0 Replies

67919 Views

Last post by breakwave922
Thu Sep 03, 2015 4:35 pm
Soltesz Lab dentate gyrus network model (2014)

Last post by ted « Wed Mar 11, 2015 10:48 pm
Replies: 5
by kfolw » Mon Mar 09, 2015 12:33 pm

5 Replies

70940 Views

Last post by ted
Wed Mar 11, 2015 10:48 pm
Units errors in mod files Morgan/Santhakumar 2007 model

Last post by ted « Wed Feb 18, 2015 5:23 pm
Replies: 7
by kfolw » Fri Feb 06, 2015 10:00 pm

7 Replies

78125 Views

Last post by ted
Wed Feb 18, 2015 5:23 pm
Question about initialization in Bartos' 2002 network model

Last post by breakwave922 « Wed Nov 05, 2014 6:11 pm
Replies: 7
by breakwave922 » Sat Nov 01, 2014 4:50 pm

7 Replies

86559 Views

Last post by breakwave922
Wed Nov 05, 2014 6:11 pm
Channel density gradient

Last post by ted « Sun May 04, 2014 11:20 pm
Replies: 1
by arunanirudhan » Sun May 04, 2014 1:34 pm

1 Replies

64511 Views

Last post by ted
Sun May 04, 2014 11:20 pm
Model ATP

Last post by ted « Sun Mar 09, 2014 11:55 am
Replies: 1
by arunanirudhan » Sun Mar 09, 2014 5:08 am

1 Replies

62774 Views

Last post by ted
Sun Mar 09, 2014 11:55 am
Poirazi 2012, Layer 5 pyramidal neuron model (access 144089)

Last post by sonyadave « Sat Dec 14, 2013 11:19 am

by sonyadave » Sat Dec 14, 2013 11:19 am

0 Replies

61798 Views

Last post by sonyadave
Sat Dec 14, 2013 11:19 am
A syntax error.

Last post by ted « Thu Nov 07, 2013 9:07 pm
Replies: 5
by ram1712 » Thu Nov 07, 2013 12:21 pm

5 Replies

72513 Views

Last post by ted
Thu Nov 07, 2013 9:07 pm
Ion channel bugs in Santhakumar/Morgan dentate gyrus model

Last post by neuromau « Tue Nov 05, 2013 7:45 pm

by neuromau » Tue Nov 05, 2013 7:45 pm

0 Replies

63720 Views

Last post by neuromau
Tue Nov 05, 2013 7:45 pm
Running the Santhakumar/Morgan model

Last post by neuromau « Tue Nov 05, 2013 7:16 pm
Replies: 1
by pascal » Mon Dec 10, 2012 11:42 am

1 Replies

64486 Views

Last post by neuromau
Tue Nov 05, 2013 7:16 pm
X-axis changes scale when adding color to plot

Last post by sanjaybioe « Mon Oct 28, 2013 11:39 pm
Replies: 2
by sanjaybioe » Mon Oct 28, 2013 1:41 am

2 Replies

65316 Views

Last post by sanjaybioe
Mon Oct 28, 2013 11:39 pm
Problems with using Extracellular Stimulation

Last post by shwetakgp « Wed Jul 03, 2013 5:46 pm
Replies: 6
by piyush.karande » Sun May 02, 2010 9:34 pm

6 Replies

79657 Views

Last post by shwetakgp
Wed Jul 03, 2013 5:46 pm
Vierling-Claassen et al 2010 model in mswin, network view

Last post by tom_morse « Mon Jan 28, 2013 11:19 am

by tom_morse » Mon Jan 28, 2013 11:19 am

0 Replies

64930 Views

Last post by tom_morse
Mon Jan 28, 2013 11:19 am
Help with McIntyre axon model

Last post by ted « Wed Jan 02, 2013 6:18 pm
Replies: 3
by nevo » Fri Nov 11, 2011 2:26 pm

3 Replies

68472 Views

Last post by ted
Wed Jan 02, 2013 6:18 pm
Dominant Tau inTsodyks-Markram synapse model..?

Last post by ted « Wed Sep 12, 2012 4:46 pm
Replies: 1
by OJAG » Mon Sep 10, 2012 5:49 pm

1 Replies

62506 Views

Last post by ted
Wed Sep 12, 2012 4:46 pm
convert geometry files

Last post by adamimos « Wed Sep 12, 2012 10:47 am

by adamimos » Wed Sep 12, 2012 10:47 am

0 Replies

63797 Views

Last post by adamimos
Wed Sep 12, 2012 10:47 am
Questions about Traub’s model

Last post by Jaekyung Kim « Wed Aug 22, 2012 11:09 pm
Replies: 4
by Jaekyung Kim » Sun Aug 19, 2012 8:53 pm

4 Replies

68520 Views

Last post by Jaekyung Kim
Wed Aug 22, 2012 11:09 pm
Conduction along demyelinated axon

Last post by dsengupta « Mon Jul 30, 2012 6:06 pm
Replies: 2
by dsengupta » Thu Jul 12, 2012 8:06 pm

2 Replies

71654 Views

Last post by dsengupta
Mon Jul 30, 2012 6:06 pm
Error: kCGErrorInvalidConnection

Last post by tseredynski « Tue Jun 26, 2012 3:33 pm
Replies: 4
by tseredynski » Tue Jun 26, 2012 11:21 am

4 Replies

70702 Views

Last post by tseredynski
Tue Jun 26, 2012 3:33 pm
Spiny Stellate Model

Last post by ted « Mon Jun 25, 2012 4:26 pm
Replies: 1
by neurondriller » Thu Jun 14, 2012 5:26 am

1 Replies

61752 Views

Last post by ted
Mon Jun 25, 2012 4:26 pm
Problem with ModelDB availability

Last post by stu « Thu Dec 22, 2011 6:31 pm
Replies: 5
by csh » Wed Mar 11, 2009 8:18 am

5 Replies

78490 Views

Last post by stu
Thu Dec 22, 2011 6:31 pm
Understanding Frankenhaeuser Huxley (FH)

Last post by ted « Fri Oct 14, 2011 1:25 pm
Replies: 1
by aupi » Fri Oct 14, 2011 2:28 am

1 Replies

66644 Views

Last post by ted
Fri Oct 14, 2011 1:25 pm
NEURON implementation of Vogels & Abbott model

Last post by ted « Sat Aug 06, 2011 9:42 am
Replies: 4
by lneisenman » Fri Aug 05, 2011 10:17 am

4 Replies

69806 Views

Last post by ted
Sat Aug 06, 2011 9:42 am
Frankenhaeuser and Huxley model with Anodal Break Excitation

Last post by PhDstudent « Tue May 24, 2011 10:47 am

by PhDstudent » Tue May 24, 2011 10:47 am

0 Replies

63970 Views

Last post by PhDstudent
Tue May 24, 2011 10:47 am
modeling giant fiber

Last post by ted « Wed Apr 13, 2011 10:41 am
Replies: 3
by demar » Tue Apr 12, 2011 5:59 am

3 Replies

66140 Views

Last post by ted
Wed Apr 13, 2011 10:41 am

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