NEURON design

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NEURON + Python
When Python is the interpreter, what is a good
design for the interface to the basic NEURON
concepts.
Moderator: hines
Topics: 433

433 Topics

2208 Posts

Last post Re: Unbounded Membrane Voltag…
by ted View the latest post
Mon Mar 20, 2023 3:23 pm
Reaction-diffusion in NEURON
Extending NEURON to handle reaction-diffusion problems.
Moderators: hines, wwlytton, ramcdougal
Topics: 75

75 Topics

316 Posts

Last post Re: parameter controlling the…
by Tuoma View the latest post
Thu Oct 13, 2022 2:16 am

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Last post

Use NEURON's native GUI tools with Python!

Last post by ted « Fri Sep 27, 2019 11:23 am
Replies: 2
by ted » Tue Aug 08, 2017 2:48 pm

2 Replies

15907 Views

Last post by ted
Fri Sep 27, 2019 11:23 am
More NEURON + Python documentation

Last post by ramcdougal « Wed Oct 24, 2018 7:07 am
Replies: 6
by ted » Mon Mar 24, 2008 10:17 am

6 Replies

28537 Views

Last post by ramcdougal
Wed Oct 24, 2018 7:07 am
More NEURON + Python resources

Last post by wjbeaver « Wed Dec 22, 2010 4:38 pm
Replies: 4
by mctavish » Wed Dec 01, 2010 3:13 pm

4 Replies

19108 Views

Last post by wjbeaver
Wed Dec 22, 2010 4:38 pm
Unbounded Membrane Voltage Increase

Last post by ted « Mon Mar 20, 2023 3:23 pm
Replies: 5
by ajpc6d » Mon Mar 13, 2023 1:41 pm

5 Replies

193 Views

Last post by ted
Mon Mar 20, 2023 3:23 pm
Using external file to set parameter value in MOD file

Last post by ted « Thu Mar 16, 2023 12:02 am
Replies: 3
by Robert Claar » Fri Feb 17, 2023 9:05 am

3 Replies

113 Views

Last post by ted
Thu Mar 16, 2023 12:02 am
The integration method and results of one compartment with only HH channel

Last post by gaoyy18 « Tue Mar 14, 2023 12:35 pm

by gaoyy18 » Tue Mar 14, 2023 12:35 pm

0 Replies

205 Views

Last post by gaoyy18
Tue Mar 14, 2023 12:35 pm
Add a VClamp of a specific form.

Last post by cassiehu « Fri Mar 03, 2023 8:30 am
Replies: 3
by cassiehu » Thu Mar 02, 2023 4:21 am

3 Replies

82 Views

Last post by cassiehu
Fri Mar 03, 2023 8:30 am
What is the name of built-in inhibitive synapse function in NEURON corresponding with h.ExpSyn()?

Last post by cassiehu « Thu Feb 23, 2023 2:54 am
Replies: 7
by cassiehu » Sun Feb 19, 2023 7:22 am

7 Replies

104 Views

Last post by cassiehu
Thu Feb 23, 2023 2:54 am
Stimulating a Cell

Last post by ajpc6d « Tue Feb 14, 2023 8:13 pm
Replies: 10
by ajpc6d » Tue Jan 03, 2023 9:30 pm

10 Replies

452 Views

Last post by ajpc6d
Tue Feb 14, 2023 8:13 pm
Steady state init with voltage VS with SaveState

Last post by ted « Thu Feb 09, 2023 1:30 pm
Replies: 4
by gabrielggn » Thu Feb 02, 2023 2:02 pm

4 Replies

195 Views

Last post by ted
Thu Feb 09, 2023 1:30 pm
how to add a current clamp in Python?

Last post by cassiehu « Sun Feb 05, 2023 7:33 am
Replies: 13
by cassiehu » Sat Dec 03, 2022 7:12 am

13 Replies

520 Views

Last post by cassiehu
Sun Feb 05, 2023 7:33 am
Nstack - stack too deep in python

Last post by ted « Fri Jan 27, 2023 11:34 am
Replies: 2
by gabrielggn » Mon Sep 19, 2022 2:58 pm

2 Replies

330 Views

Last post by ted
Fri Jan 27, 2023 11:34 am
Switching L2/3 morphology in model but preserving intrinsic and synaptic properties.

Last post by alexandrapierri « Mon Dec 05, 2022 1:37 pm
Replies: 2
by alexandrapierri » Fri Dec 02, 2022 12:09 am

2 Replies

284 Views

Last post by alexandrapierri
Mon Dec 05, 2022 1:37 pm
recording delivered pulses using pulsedistrib.zip

Last post by ted « Wed Nov 16, 2022 1:34 am
Replies: 3
by alexandrapierri » Tue Nov 15, 2022 12:18 am

3 Replies

258 Views

Last post by ted
Wed Nov 16, 2022 1:34 am
Extracellular Stimuli with Python + Vector Play

Last post by Kayco « Thu Nov 10, 2022 11:03 am
Replies: 2
by Kayco » Fri Nov 04, 2022 4:35 pm

2 Replies

1388 Views

Last post by Kayco
Thu Nov 10, 2022 11:03 am
Depolarization step during voltage clamp

Last post by alexandrapierri « Tue Nov 08, 2022 10:48 pm
Replies: 4
by alexandrapierri » Mon Oct 31, 2022 9:56 pm

4 Replies

327 Views

Last post by alexandrapierri
Tue Nov 08, 2022 10:48 pm
record calcium concentration only from pyramidal cells

Last post by alexandrapierri « Thu Nov 03, 2022 10:35 pm
Replies: 2
by alexandrapierri » Thu Oct 27, 2022 3:07 pm

2 Replies

302 Views

Last post by alexandrapierri
Thu Nov 03, 2022 10:35 pm
parameter controlling the rate of influx of a species in multiple compartments

Last post by Tuoma « Thu Oct 13, 2022 2:16 am
Replies: 1
by Tuoma » Wed Oct 05, 2022 11:09 am

1 Replies

440 Views

Last post by Tuoma
Thu Oct 13, 2022 2:16 am
Insert an ion channel written in a .mod file

Last post by ted « Fri Sep 30, 2022 4:13 am
Replies: 8
by cassiehu » Sun Sep 11, 2022 10:33 pm

8 Replies

1337 Views

Last post by ted
Fri Sep 30, 2022 4:13 am
Reading species concentration in a MOD file using a list of species

Last post by ramcdougal « Mon Sep 19, 2022 3:05 pm
Replies: 1
by Tuoma » Mon Sep 19, 2022 7:33 am

1 Replies

208 Views

Last post by ramcdougal
Mon Sep 19, 2022 3:05 pm
Mining Code from Channel Builder

Last post by ted « Tue Sep 13, 2022 2:19 pm
Replies: 11
by BBAmp » Fri Mar 26, 2010 2:53 pm

11 Replies

5364 Views

Last post by ted
Tue Sep 13, 2022 2:19 pm
Accessing Pointers instantiated through Python

Last post by oitani « Thu Sep 01, 2022 3:39 pm
Replies: 6
by oitani » Wed Aug 10, 2022 1:12 pm

6 Replies

3126 Views

Last post by oitani
Thu Sep 01, 2022 3:39 pm
POINTER is not thread safe

Last post by ted « Thu Aug 11, 2022 9:58 pm
Replies: 6
by alexandrapierri » Fri Aug 05, 2022 10:27 pm

6 Replies

1487 Views

Last post by ted
Thu Aug 11, 2022 9:58 pm
mechanisms written in python?

Last post by ted « Wed Aug 03, 2022 2:34 pm
Replies: 5
by alexandrapierri » Mon Aug 01, 2022 9:24 pm

5 Replies

867 Views

Last post by ted
Wed Aug 03, 2022 2:34 pm
Recording synaptic currents

Last post by alexandrapierri « Wed Jul 27, 2022 6:16 pm
Replies: 4
by alexandrapierri » Mon Jul 25, 2022 1:34 pm

4 Replies

504 Views

Last post by alexandrapierri
Wed Jul 27, 2022 6:16 pm
rxd.Reaction(...) causes finitialize to not work

Last post by neuron121! « Wed Jul 27, 2022 1:06 pm
Replies: 1
by neuron121! » Mon Jul 25, 2022 7:53 pm

1 Replies

408 Views

Last post by neuron121!
Wed Jul 27, 2022 1:06 pm
Can the simulation results of Python and HOC be different?

Last post by virtualkss « Wed Jul 20, 2022 10:05 pm
Replies: 5
by virtualkss » Mon Jul 18, 2022 5:56 am

5 Replies

529 Views

Last post by virtualkss
Wed Jul 20, 2022 10:05 pm
Detection of MOD files in rxd.Region 'o'

Last post by malthe.nielsen « Mon Jul 04, 2022 2:47 am
Replies: 3
by malthe.nielsen » Thu May 26, 2022 2:30 am

3 Replies

717 Views

Last post by malthe.nielsen
Mon Jul 04, 2022 2:47 am
Minor typo in tutorial

Last post by ramcdougal « Mon Jun 13, 2022 3:56 pm
Replies: 1
by fietkiewicz » Mon Jun 13, 2022 3:45 pm

1 Replies

352 Views

Last post by ramcdougal
Mon Jun 13, 2022 3:56 pm
Mechanisms ignored when attempting to initialize events

Last post by pacificmadrone « Wed Jun 01, 2022 3:26 pm
Replies: 2
by pacificmadrone » Thu May 12, 2022 2:55 pm

2 Replies

914 Views

Last post by pacificmadrone
Wed Jun 01, 2022 3:26 pm
Uploading .swc file through .hoc

Last post by ted « Mon Apr 25, 2022 11:46 am
Replies: 3
by neuron121! » Sat Apr 02, 2022 2:13 pm

3 Replies

621 Views

Last post by ted
Mon Apr 25, 2022 11:46 am
Assignments in time and time-dependent functions

Last post by ramcdougal « Sat Apr 02, 2022 5:35 pm
Replies: 2
by duytanph » Wed Feb 16, 2022 6:40 pm

2 Replies

523 Views

Last post by ramcdougal
Sat Apr 02, 2022 5:35 pm
Problem plotting PlotShape

Last post by ted « Tue Mar 22, 2022 12:02 pm
Replies: 7
by fvarkevisser » Thu Sep 23, 2021 10:53 am

7 Replies

1319 Views

Last post by ted
Tue Mar 22, 2022 12:02 pm
Using setpointer() and RXD concentrations

Last post by ramcdougal « Mon Mar 07, 2022 11:40 am
Replies: 3
by amerg » Mon Aug 26, 2019 6:16 pm

3 Replies

2001 Views

Last post by ramcdougal
Mon Mar 07, 2022 11:40 am
IClamp and ImpedanceRatio in python

Last post by rmaina « Tue Feb 15, 2022 2:12 pm
Replies: 2
by rmaina » Fri Feb 11, 2022 12:46 pm

2 Replies

648 Views

Last post by rmaina
Tue Feb 15, 2022 2:12 pm
Plotting Ca current through different types of VDCC's

Last post by adamjhn « Thu Feb 10, 2022 10:53 am
Replies: 6
by sangwonc » Mon Dec 06, 2021 6:40 pm

6 Replies

6230 Views

Last post by adamjhn
Thu Feb 10, 2022 10:53 am
Different initial concentration and potential in different cells

Last post by adamjhn « Thu Feb 03, 2022 3:08 pm
Replies: 2
by Barbara » Tue Feb 01, 2022 9:32 am

2 Replies

479 Views

Last post by adamjhn
Thu Feb 03, 2022 3:08 pm
Shape plot update from Python

Last post by ted « Tue Feb 01, 2022 3:15 pm
Replies: 4
by ziemek » Mon Dec 02, 2019 1:22 pm

4 Replies

2183 Views

Last post by ted
Tue Feb 01, 2022 3:15 pm
Recording multiple netcon's weight with one synapse mechanism

Last post by ted « Fri Dec 31, 2021 11:11 am
Replies: 3
by dragon88hj » Thu Dec 30, 2021 1:58 am

3 Replies

651 Views

Last post by ted
Fri Dec 31, 2021 11:11 am
solving differential equation describing Vm

Last post by ted « Sat Dec 04, 2021 4:57 pm
Replies: 1
by finesniper » Fri Dec 03, 2021 5:07 pm

1 Replies

3649 Views

Last post by ted
Sat Dec 04, 2021 4:57 pm
How to refer to numeric value of crxd.v?

Last post by adamjhn « Tue Nov 23, 2021 3:00 pm
Replies: 3
by sangwonc » Wed Nov 17, 2021 6:33 pm

3 Replies

967 Views

Last post by adamjhn
Tue Nov 23, 2021 3:00 pm
hh.mod + Python + membrane potential at several points of the soma

Last post by ted « Tue Nov 16, 2021 12:01 pm
Replies: 5
by smetens » Wed Jun 09, 2021 11:09 am

5 Replies

2132 Views

Last post by ted
Tue Nov 16, 2021 12:01 pm
Time dependent NetCon weight

Last post by ted « Thu Nov 04, 2021 12:10 pm
Replies: 1
by ido4848 » Thu Nov 04, 2021 3:35 am

1 Replies

611 Views

Last post by ted
Thu Nov 04, 2021 12:10 pm
added a synapse with python

Last post by ted « Wed Nov 03, 2021 2:04 pm
Replies: 1
by OronKotler » Sun Oct 31, 2021 4:08 am

1 Replies

621 Views

Last post by ted
Wed Nov 03, 2021 2:04 pm
Adding a Rate to an Ion based on the flux of another Reaction function

Last post by adamjhn « Thu Oct 14, 2021 11:41 am
Replies: 1
by jetlim » Wed Oct 13, 2021 3:22 pm

1 Replies

5502 Views

Last post by adamjhn
Thu Oct 14, 2021 11:41 am
How to set spike detection threshold for pc.spike_record

Last post by Johannes « Thu Oct 14, 2021 9:40 am
Replies: 2
by Johannes » Wed Oct 13, 2021 6:03 am

2 Replies

3582 Views

Last post by Johannes
Thu Oct 14, 2021 9:40 am
Error running NEURON with embedded Python

Last post by ted « Wed Oct 13, 2021 12:37 pm
Replies: 3
by ttarnaud » Fri Dec 07, 2018 10:56 am

3 Replies

6491 Views

Last post by ted
Wed Oct 13, 2021 12:37 pm
problem instantiating a hoc template from python

Last post by ted « Sun Sep 19, 2021 1:25 am
Replies: 3
by alexandrapierri » Fri Sep 17, 2021 8:46 pm

3 Replies

938 Views

Last post by ted
Sun Sep 19, 2021 1:25 am
undefined symbol: nrnpython_start

Last post by Feanor « Fri Sep 17, 2021 10:57 am
Replies: 8
by Feanor » Mon Sep 13, 2021 4:25 pm

8 Replies

1684 Views

Last post by Feanor
Fri Sep 17, 2021 10:57 am
Using NEURON to model a system of endocrine cells

Last post by Robert Claar « Sat Aug 28, 2021 3:50 pm
Replies: 3
by Robert Claar » Tue Jun 30, 2020 2:58 pm

3 Replies

1714 Views

Last post by Robert Claar
Sat Aug 28, 2021 3:50 pm

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