NEURON + Python

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Use NEURON's native GUI tools with Python!

Last post by ted « Fri Sep 27, 2019 11:23 am
Replies: 2
by ted » Tue Aug 08, 2017 2:48 pm

2 Replies

43783 Views

Last post by ted
Fri Sep 27, 2019 11:23 am
More NEURON + Python documentation

Last post by ramcdougal « Wed Oct 24, 2018 7:07 am
Replies: 6
by ted » Mon Mar 24, 2008 10:17 am

6 Replies

58926 Views

Last post by ramcdougal
Wed Oct 24, 2018 7:07 am
Type annotation of NEURON objects

Last post by hines « Mon Sep 16, 2024 9:30 am
Replies: 3
by jared » Thu Aug 22, 2024 3:09 pm

3 Replies

7014 Views

Last post by hines
Mon Sep 16, 2024 9:30 am
h.frecord_init() and Python Multiprocessing

Last post by Robert Claar « Mon Aug 19, 2024 1:53 pm
Replies: 7
by Robert Claar » Mon Aug 05, 2024 11:07 am

7 Replies

6659 Views

Last post by Robert Claar
Mon Aug 19, 2024 1:53 pm
Using a hoc cell template with Python

Last post by ted « Fri Aug 16, 2024 11:28 am
Replies: 3
by pascal » Wed Aug 14, 2024 12:59 pm

3 Replies

5109 Views

Last post by ted
Fri Aug 16, 2024 11:28 am
can't run without GUI in Linux + slurm

Last post by ted « Wed Aug 14, 2024 12:00 pm
Replies: 2
by patoorio » Mon Aug 12, 2024 11:36 am

2 Replies

4293 Views

Last post by ted
Wed Aug 14, 2024 12:00 pm
Disagreement between Crank-Nicolson, Backward Euler, and CVODE

Last post by ajpc6d « Thu Aug 08, 2024 1:04 pm
Replies: 2
by ajpc6d » Mon Aug 05, 2024 12:42 pm

2 Replies

4621 Views

Last post by ajpc6d
Thu Aug 08, 2024 1:04 pm
Issue with asc vs swc file format

Last post by louiepatch « Mon Aug 05, 2024 11:00 pm

by louiepatch » Mon Aug 05, 2024 11:00 pm

0 Replies

6106 Views

Last post by louiepatch
Mon Aug 05, 2024 11:00 pm
Non-uniform parameter with colon notation?

Last post by patoorio « Wed Jul 31, 2024 3:46 pm
Replies: 2
by patoorio » Wed Jul 31, 2024 10:31 am

2 Replies

4823 Views

Last post by patoorio
Wed Jul 31, 2024 3:46 pm
Diameter of a Squid Giant Axon Model

Last post by mi2n « Fri Jul 19, 2024 4:44 am
Replies: 6
by mi2n » Tue Feb 27, 2024 4:13 am

6 Replies

15164 Views

Last post by mi2n
Fri Jul 19, 2024 4:44 am
change the onset time of voltage clamp

Last post by ted « Mon Jul 15, 2024 12:19 pm
Replies: 3
by Ziling Wang » Fri Jul 12, 2024 1:44 am

3 Replies

7021 Views

Last post by ted
Mon Jul 15, 2024 12:19 pm
Can't we write tautable.hoc in Python?

Last post by mi2n « Mon Jul 01, 2024 2:27 am
Replies: 2
by mi2n » Fri May 24, 2024 3:36 am

2 Replies

10404 Views

Last post by mi2n
Mon Jul 01, 2024 2:27 am
Loading a Linear Circuit Mechanism in Python

Last post by ted « Fri Jun 14, 2024 10:24 am
Replies: 1
by swienbar » Fri Jun 07, 2024 2:26 pm

1 Replies

13519 Views

Last post by ted
Fri Jun 14, 2024 10:24 am
Using CVode with Short Pulse Stimuli

Last post by ajpc6d « Wed Jun 05, 2024 7:42 pm

by ajpc6d » Wed Jun 05, 2024 7:42 pm

0 Replies

13874 Views

Last post by ajpc6d
Wed Jun 05, 2024 7:42 pm
Setting and Confirming NEURON's Solver

Last post by ajpc6d « Tue Jun 04, 2024 8:22 pm
Replies: 3
by ajpc6d » Fri May 24, 2024 12:11 pm

3 Replies

11464 Views

Last post by ajpc6d
Tue Jun 04, 2024 8:22 pm
NetStim causes SaveState crash

Last post by ted « Sat Apr 13, 2024 3:45 pm
Replies: 6
by ajpc6d » Fri Mar 22, 2024 7:11 pm

6 Replies

13142 Views

Last post by ted
Sat Apr 13, 2024 3:45 pm
Python Code Continues Execution Despite HOC Error

Last post by EleBern « Wed Apr 10, 2024 10:04 am
Replies: 4
by EleBern » Tue Apr 02, 2024 5:32 am

4 Replies

10685 Views

Last post by EleBern
Wed Apr 10, 2024 10:04 am
Saving fixed timestep data using cvode variable timestep integration

Last post by Robert Claar « Wed Feb 21, 2024 7:06 am
Replies: 2
by Robert Claar » Tue Feb 20, 2024 1:53 pm

2 Replies

11520 Views

Last post by Robert Claar
Wed Feb 21, 2024 7:06 am
User defined function to set play vectors

Last post by Robert Claar « Tue Dec 19, 2023 2:27 pm
Replies: 2
by Robert Claar » Wed Nov 22, 2023 3:39 pm

2 Replies

47434 Views

Last post by Robert Claar
Tue Dec 19, 2023 2:27 pm
Issue with SaveState

Last post by pascal « Tue Dec 05, 2023 4:09 pm
Replies: 2
by pascal » Fri Nov 17, 2023 7:42 pm

2 Replies

30799 Views

Last post by pascal
Tue Dec 05, 2023 4:09 pm
Dealing with objects defined in functions

Last post by ted « Fri Oct 27, 2023 9:48 am
Replies: 1
by genis » Mon Oct 23, 2023 3:54 pm

1 Replies

22926 Views

Last post by ted
Fri Oct 27, 2023 9:48 am
CoreNeuron verbose output

Last post by ted « Mon Oct 23, 2023 11:44 am
Replies: 3
by sean » Fri Oct 20, 2023 8:38 am

3 Replies

23156 Views

Last post by ted
Mon Oct 23, 2023 11:44 am
h.parallelContext in a model being simulated on a cluster

Last post by Nilapratim_S « Mon Oct 16, 2023 1:16 pm
Replies: 3
by Nilapratim_S » Mon Oct 16, 2023 1:10 am

3 Replies

22386 Views

Last post by Nilapratim_S
Mon Oct 16, 2023 1:16 pm
Different total area from python and hoc cell class

Last post by ted « Tue Oct 03, 2023 12:40 pm
Replies: 5
by opdalex » Thu Sep 28, 2023 6:23 am

5 Replies

25455 Views

Last post by ted
Tue Oct 03, 2023 12:40 pm
MulRunFitter & Python

Last post by ted « Tue Sep 12, 2023 3:26 pm
Replies: 3
by Robert Claar » Sat Sep 09, 2023 1:03 pm

3 Replies

24338 Views

Last post by ted
Tue Sep 12, 2023 3:26 pm
Play Stimulus Vectors Sequentially During Run-time

Last post by ajpc6d « Thu Aug 17, 2023 10:06 am
Replies: 2
by ajpc6d » Tue Aug 15, 2023 3:28 pm

2 Replies

26256 Views

Last post by ajpc6d
Thu Aug 17, 2023 10:06 am
Play a Unique Vector to Each Model Segment

Last post by ramcdougal « Fri Jul 28, 2023 10:43 am
Replies: 1
by ajpc6d » Thu Jul 27, 2023 2:46 pm

1 Replies

24922 Views

Last post by ramcdougal
Fri Jul 28, 2023 10:43 am
h.continuerun() behavior different when cvode is active

Last post by Robert Claar « Thu Jul 06, 2023 4:53 pm
Replies: 2
by Robert Claar » Mon Jun 26, 2023 5:06 pm

2 Replies

25698 Views

Last post by Robert Claar
Thu Jul 06, 2023 4:53 pm
Gap junction network not seeming to conduct

Last post by ted « Tue Jul 04, 2023 5:05 pm
Replies: 3
by swienbar » Thu Jun 29, 2023 2:55 pm

3 Replies

26751 Views

Last post by ted
Tue Jul 04, 2023 5:05 pm
Unable to access current attribute.

Last post by ramcdougal « Thu Jun 29, 2023 10:39 am
Replies: 1
by roybens » Wed Jun 28, 2023 10:30 pm

1 Replies

24893 Views

Last post by ramcdougal
Thu Jun 29, 2023 10:39 am
Two voltage clamp with a delay

Last post by bremen « Sat Jun 24, 2023 12:38 pm
Replies: 1
by bremen » Fri Jun 09, 2023 4:48 am

1 Replies

24036 Views

Last post by bremen
Sat Jun 24, 2023 12:38 pm
ModelView and ModuleNotFoundError: No module named 'numpy'

Last post by wlkath « Fri Jun 02, 2023 9:49 am
Replies: 7
by wlkath » Wed May 17, 2023 4:26 pm

7 Replies

30200 Views

Last post by wlkath
Fri Jun 02, 2023 9:49 am
How to cut the simulation in-between into two runs?

Last post by ramcdougal « Thu Jun 01, 2023 9:53 pm
Replies: 6
by gaoyy18 » Mon May 22, 2023 5:44 am

6 Replies

30716 Views

Last post by ramcdougal
Thu Jun 01, 2023 9:53 pm
The integration method and results of one compartment with only HH channel

Last post by gaoyy18 « Mon May 22, 2023 6:01 am
Replies: 1
by gaoyy18 » Tue Mar 14, 2023 12:35 pm

1 Replies

25773 Views

Last post by gaoyy18
Mon May 22, 2023 6:01 am
Plotshape question

Last post by wlkath « Tue May 16, 2023 12:04 pm
Replies: 2
by wlkath » Sat May 13, 2023 5:20 pm

2 Replies

24678 Views

Last post by wlkath
Tue May 16, 2023 12:04 pm
What is a NEURON equivalent of a point-neuron?

Last post by ted « Fri Apr 28, 2023 11:04 am
Replies: 3
by mi2n » Thu Apr 13, 2023 12:24 pm

3 Replies

25313 Views

Last post by ted
Fri Apr 28, 2023 11:04 am
"Linear Circuits Builder" programmatically (Python)

Last post by mgiugliano « Thu Mar 30, 2023 1:30 pm

by mgiugliano » Thu Mar 30, 2023 1:30 pm

0 Replies

49337 Views

Last post by mgiugliano
Thu Mar 30, 2023 1:30 pm
Null pointer error when trying to access the pointer through python

Last post by ted « Wed Mar 29, 2023 7:16 pm
Replies: 4
by ipv1313 » Sun Mar 26, 2023 6:06 am

4 Replies

28412 Views

Last post by ted
Wed Mar 29, 2023 7:16 pm
Unbounded Membrane Voltage Increase

Last post by ted « Mon Mar 20, 2023 3:23 pm
Replies: 5
by ajpc6d » Mon Mar 13, 2023 1:41 pm

5 Replies

31381 Views

Last post by ted
Mon Mar 20, 2023 3:23 pm
Using external file to set parameter value in MOD file

Last post by ted « Thu Mar 16, 2023 12:02 am
Replies: 3
by Robert Claar » Fri Feb 17, 2023 9:05 am

3 Replies

25788 Views

Last post by ted
Thu Mar 16, 2023 12:02 am
What is the name of built-in inhibitive synapse function in NEURON corresponding with h.ExpSyn()?

Last post by cassiehu « Thu Feb 23, 2023 2:54 am
Replies: 7
by cassiehu » Sun Feb 19, 2023 7:22 am

7 Replies

26968 Views

Last post by cassiehu
Thu Feb 23, 2023 2:54 am
Stimulating a Cell

Last post by ajpc6d « Tue Feb 14, 2023 8:13 pm
Replies: 10
by ajpc6d » Tue Jan 03, 2023 9:30 pm

10 Replies

31767 Views

Last post by ajpc6d
Tue Feb 14, 2023 8:13 pm
Steady state init with voltage VS with SaveState

Last post by ted « Thu Feb 09, 2023 1:30 pm
Replies: 4
by gabrielggn » Thu Feb 02, 2023 2:02 pm

4 Replies

29591 Views

Last post by ted
Thu Feb 09, 2023 1:30 pm
how to add a current clamp in Python?

Last post by cassiehu « Sun Feb 05, 2023 7:33 am
Replies: 13
by cassiehu » Sat Dec 03, 2022 7:12 am

13 Replies

36941 Views

Last post by cassiehu
Sun Feb 05, 2023 7:33 am
Nstack - stack too deep in python

Last post by ted « Fri Jan 27, 2023 11:34 am
Replies: 2
by gabrielggn » Mon Sep 19, 2022 2:58 pm

2 Replies

27655 Views

Last post by ted
Fri Jan 27, 2023 11:34 am
Switching L2/3 morphology in model but preserving intrinsic and synaptic properties.

Last post by alexandrapierri « Mon Dec 05, 2022 1:37 pm
Replies: 2
by alexandrapierri » Fri Dec 02, 2022 12:09 am

2 Replies

24574 Views

Last post by alexandrapierri
Mon Dec 05, 2022 1:37 pm
recording delivered pulses using pulsedistrib.zip

Last post by ted « Wed Nov 16, 2022 1:34 am
Replies: 3
by alexandrapierri » Tue Nov 15, 2022 12:18 am

3 Replies

24060 Views

Last post by ted
Wed Nov 16, 2022 1:34 am
Extracellular Stimuli with Python + Vector Play

Last post by Kayco « Thu Nov 10, 2022 11:03 am
Replies: 2
by Kayco » Fri Nov 04, 2022 4:35 pm

2 Replies

24952 Views

Last post by Kayco
Thu Nov 10, 2022 11:03 am
Depolarization step during voltage clamp

Last post by alexandrapierri « Tue Nov 08, 2022 10:48 pm
Replies: 4
by alexandrapierri » Mon Oct 31, 2022 9:56 pm

4 Replies

22698 Views

Last post by alexandrapierri
Tue Nov 08, 2022 10:48 pm
record calcium concentration only from pyramidal cells

Last post by alexandrapierri « Thu Nov 03, 2022 10:35 pm
Replies: 2
by alexandrapierri » Thu Oct 27, 2022 3:07 pm

2 Replies

20663 Views

Last post by alexandrapierri
Thu Nov 03, 2022 10:35 pm

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