Anatomically detailed models

New Topic

212 topics

Topics

Replies

Views

Last post

Determining distance from soma along apical dendrite

Last post by ted « Fri Oct 04, 2024 10:31 am
Replies: 7
by pascal » Thu Sep 26, 2024 1:02 am

7 Replies

96159 Views

Last post by ted
Fri Oct 04, 2024 10:31 am
Importing SWC files and best practices

Last post by ted « Wed Sep 18, 2024 6:38 pm
Replies: 5
by JBall » Thu Sep 05, 2024 6:20 pm

5 Replies

54487 Views

Last post by ted
Wed Sep 18, 2024 6:38 pm
Interpreting the results of electrotonic analysis

Last post by bril27 « Wed Sep 27, 2023 9:03 pm
Replies: 6
by bril27 » Tue Sep 26, 2023 4:14 am

6 Replies

80087 Views

Last post by bril27
Wed Sep 27, 2023 9:03 pm
Voltage gradient and color scale in anatomically detailed model in Python

Last post by ramcdougal « Sun Sep 03, 2023 4:36 pm
Replies: 1
by bril27 » Thu Aug 24, 2023 7:12 am

1 Replies

42202 Views

Last post by ramcdougal
Sun Sep 03, 2023 4:36 pm
Setting RMP according to experimental measurements.

Last post by ted « Mon Jul 24, 2023 11:01 am
Replies: 5
by alexandrapierri » Thu Jul 20, 2023 7:48 pm

5 Replies

47169 Views

Last post by ted
Mon Jul 24, 2023 11:01 am
All or none action potentials?

Last post by ted « Sun May 14, 2023 11:42 am
Replies: 1
by alexandrapierri » Wed May 10, 2023 11:49 pm

1 Replies

34622 Views

Last post by ted
Sun May 14, 2023 11:42 am
Compartments vs Segments vs Sections

Last post by ted « Wed May 03, 2023 12:20 pm
Replies: 8
by jdlawson » Fri Apr 21, 2023 1:16 pm

8 Replies

44508 Views

Last post by ted
Wed May 03, 2023 12:20 pm
Extracellular Fields

Last post by tonyclick « Wed Apr 12, 2023 10:28 pm
Replies: 30
by Sherif » Thu Oct 13, 2005 5:14 pm
1

2

3
30 Replies

199861 Views

Last post by tonyclick
Wed Apr 12, 2023 10:28 pm
Segmentation violation error in swc

Last post by alexandrapierri « Mon Mar 20, 2023 10:33 pm
Replies: 4
by alexandrapierri » Fri Mar 17, 2023 3:15 pm

4 Replies

37756 Views

Last post by alexandrapierri
Mon Mar 20, 2023 10:33 pm
cells don't fire without axon

Last post by ted « Sun Feb 26, 2023 11:06 am
Replies: 1
by alexandrapierri » Fri Feb 24, 2023 9:17 pm

1 Replies

29385 Views

Last post by ted
Sun Feb 26, 2023 11:06 am
EOF in fscan

Last post by alexandrapierri « Fri Feb 24, 2023 9:08 pm
Replies: 2
by alexandrapierri » Mon Feb 20, 2023 5:54 pm

2 Replies

29748 Views

Last post by alexandrapierri
Fri Feb 24, 2023 9:08 pm
SWC file content

Last post by ted « Thu Jan 05, 2023 12:23 pm
Replies: 6
by alexandrapierri » Mon Jan 02, 2023 5:24 pm

6 Replies

37506 Views

Last post by ted
Thu Jan 05, 2023 12:23 pm
Uploading .swc file through .hoc

Last post by ted « Mon Apr 25, 2022 11:46 am
Replies: 3
by neuron121! » Sat Apr 02, 2022 2:13 pm

3 Replies

34516 Views

Last post by ted
Mon Apr 25, 2022 11:46 am
File browser dialog missing in Import3D

Last post by hines « Mon Oct 11, 2021 10:49 am
Replies: 26
by bsuter » Mon Sep 27, 2010 10:53 am
1

2
26 Replies

121350 Views

Last post by hines
Mon Oct 11, 2021 10:49 am
Importing Imaris files using import 3D tool

Last post by ted « Tue Sep 21, 2021 5:25 pm
Replies: 3
by mehaj » Mon Sep 13, 2021 2:58 am

3 Replies

34662 Views

Last post by ted
Tue Sep 21, 2021 5:25 pm
Error in loading morphology from swc file

Last post by ted « Sat Sep 18, 2021 1:02 am
Replies: 4
by Feanor » Fri Sep 17, 2021 11:04 am

4 Replies

35735 Views

Last post by ted
Sat Sep 18, 2021 1:02 am
cable model with manual diameters and dynamics

Last post by ted « Fri Sep 17, 2021 9:59 am
Replies: 1
by shirin » Fri Sep 17, 2021 3:32 am

1 Replies

31715 Views

Last post by ted
Fri Sep 17, 2021 9:59 am
Import3d tool via Jupyter

Last post by landoskape « Fri Aug 27, 2021 6:49 pm
Replies: 2
by landoskape » Thu Aug 12, 2021 11:37 am

2 Replies

34663 Views

Last post by landoskape
Fri Aug 27, 2021 6:49 pm
Looking for a model illustrating spike frequency adaptation

Last post by careBearStare « Fri Jul 09, 2021 8:23 pm
Replies: 2
by careBearStare » Tue Jul 06, 2021 8:59 pm

2 Replies

32242 Views

Last post by careBearStare
Fri Jul 09, 2021 8:23 pm
NEURON changes dendrite diameter to default value

Last post by schmidla « Fri Mar 05, 2021 3:22 am
Replies: 4
by schmidla » Tue Mar 02, 2021 11:54 am

4 Replies

35468 Views

Last post by schmidla
Fri Mar 05, 2021 3:22 am
Loading a morphology as a hoc file

Last post by ted « Wed Mar 03, 2021 2:53 pm
Replies: 9
by sohaib786 » Thu Feb 25, 2021 9:02 am

9 Replies

47398 Views

Last post by ted
Wed Mar 03, 2021 2:53 pm
The effect of changed dt and steps_per_ms

Last post by ted « Tue Jan 19, 2021 11:08 am
Replies: 3
by Christine Chung » Wed Jan 13, 2021 2:45 am

3 Replies

33055 Views

Last post by ted
Tue Jan 19, 2021 11:08 am
Questions about geometry & area(x)

Last post by ted « Thu Sep 10, 2020 12:29 am
Replies: 3
by agmccrei » Fri Sep 11, 2015 2:44 am

3 Replies

41032 Views

Last post by ted
Thu Sep 10, 2020 12:29 am
morphology altered when Import3d exports to CellBuilder

Last post by DavidSwygart « Mon May 11, 2020 10:45 pm
Replies: 4
by DavidSwygart » Mon Apr 27, 2020 12:13 am

4 Replies

36024 Views

Last post by DavidSwygart
Mon May 11, 2020 10:45 pm
importing .asc (Neurolucida ASCII) files with Python

Last post by ted « Fri Apr 24, 2020 10:41 am
Replies: 4
by hjunji21 » Tue Jun 05, 2018 5:29 pm

4 Replies

42317 Views

Last post by ted
Fri Apr 24, 2020 10:41 am
Neuron transforms soma that is loaded from .swc. What is the rule for it?

Last post by vogdb « Fri Feb 21, 2020 7:12 am
Replies: 4
by vogdb » Mon Feb 10, 2020 6:58 am

4 Replies

37353 Views

Last post by vogdb
Fri Feb 21, 2020 7:12 am
altering length and diameter over a subset

Last post by ted « Sun Dec 22, 2019 9:36 pm
Replies: 1
by fabien tell » Fri Dec 20, 2019 9:41 am

1 Replies

31548 Views

Last post by ted
Sun Dec 22, 2019 9:36 pm
Is there any way to bifurcate axon?

Last post by ted « Wed Dec 18, 2019 9:10 pm
Replies: 3
by Christine Chung » Tue Dec 17, 2019 12:02 am

3 Replies

34921 Views

Last post by ted
Wed Dec 18, 2019 9:10 pm
Precise 3D morphology

Last post by ted « Thu Dec 12, 2019 10:49 am
Replies: 6
by ziemek » Tue Dec 10, 2019 2:41 pm

6 Replies

39870 Views

Last post by ted
Thu Dec 12, 2019 10:49 am
measurments of area by section

Last post by fabien tell « Mon Nov 18, 2019 7:22 am
Replies: 2
by fabien tell » Fri Nov 15, 2019 8:55 am

2 Replies

33342 Views

Last post by fabien tell
Mon Nov 18, 2019 7:22 am
3D rotation in Cell Builder

Last post by ted « Wed Oct 09, 2019 10:29 am
Replies: 3
by DavidSwygart » Fri Oct 04, 2019 5:37 pm

3 Replies

34446 Views

Last post by ted
Wed Oct 09, 2019 10:29 am
Export to .hoc with CellBuilder from Python

Last post by vogdb « Wed Sep 11, 2019 12:07 pm
Replies: 2
by vogdb » Tue Sep 10, 2019 12:32 pm

2 Replies

32934 Views

Last post by vogdb
Wed Sep 11, 2019 12:07 pm
Save model's biophysics and morphology programmatically to .hoc

Last post by vogdb « Wed Sep 04, 2019 6:42 am
Replies: 3
by vogdb » Tue Sep 03, 2019 11:25 am

3 Replies

33449 Views

Last post by vogdb
Wed Sep 04, 2019 6:42 am
How does 'Z. F. Mainen and T. J. Sejnowski (1996)' model work?

Last post by Christine Chung « Fri Aug 09, 2019 1:48 am
Replies: 2
by Christine Chung » Thu Aug 08, 2019 7:51 am

2 Replies

33195 Views

Last post by Christine Chung
Fri Aug 09, 2019 1:48 am
Neurolucida to NEURON best practices?

Last post by hines « Tue Jul 16, 2019 8:34 pm
Replies: 26
by bsuter » Fri Oct 29, 2010 2:36 am
1

2
26 Replies

108278 Views

Last post by hines
Tue Jul 16, 2019 8:34 pm
Morphology import error

Last post by ted « Mon Jul 15, 2019 3:30 pm
Replies: 4
by shyam_u2 » Tue Jul 02, 2019 10:07 am

4 Replies

34782 Views

Last post by ted
Mon Jul 15, 2019 3:30 pm
Guidance on plotting cell's geometry in Python?

Last post by JustasB « Wed Jun 12, 2019 8:43 pm
Replies: 4
by dgalt » Fri May 20, 2016 12:02 pm

4 Replies

47110 Views

Last post by JustasB
Wed Jun 12, 2019 8:43 pm
converting hoc to swc

Last post by ted « Sun Jun 09, 2019 8:50 am
Replies: 7
by mflynn » Thu Feb 08, 2007 7:00 pm

7 Replies

48794 Views

Last post by ted
Sun Jun 09, 2019 8:50 am
Recreating JUST the morphology from an available model (that is coded in an unfamiliar way)

Last post by sbrich « Tue May 07, 2019 4:21 pm
Replies: 3
by sbrich » Fri May 03, 2019 10:46 am

3 Replies

34464 Views

Last post by sbrich
Tue May 07, 2019 4:21 pm
Confusion regarding get_loc and h.cas

Last post by ted « Fri Mar 15, 2019 11:35 am
Replies: 11
by sbrich » Thu Mar 07, 2019 3:03 pm

11 Replies

50897 Views

Last post by ted
Fri Mar 15, 2019 11:35 am
BioPhysical properties of imported morphology in Python

Last post by ted « Tue Mar 12, 2019 10:57 am
Replies: 9
by sohaib786 » Tue Mar 05, 2019 9:16 am

9 Replies

42808 Views

Last post by ted
Tue Mar 12, 2019 10:57 am
Placing a point process at a known 3D location

Last post by ted « Tue Dec 18, 2018 6:39 pm
Replies: 3
by DavidSwygart » Tue Dec 11, 2018 11:45 am

3 Replies

35678 Views

Last post by ted
Tue Dec 18, 2018 6:39 pm
Using Impedance Class for model with Ca accumulation

Last post by Darshan « Thu Sep 27, 2018 10:52 am
Replies: 8
by Darshan » Sat Sep 22, 2018 8:44 am

8 Replies

52330 Views

Last post by Darshan
Thu Sep 27, 2018 10:52 am
GUID keyword error when importing .asc

Last post by ted « Tue Sep 18, 2018 2:06 pm
Replies: 3
by aeronlaffere » Fri Aug 31, 2018 12:26 pm

3 Replies

34807 Views

Last post by ted
Tue Sep 18, 2018 2:06 pm
How to calculate calcium concentration in multi-compartment model

Last post by ted « Fri Sep 14, 2018 12:21 pm
Replies: 2
by NorthWang » Sun Sep 02, 2018 7:55 am

2 Replies

33850 Views

Last post by ted
Fri Sep 14, 2018 12:21 pm
how to calculate section area

Last post by fabien tell « Tue Aug 28, 2018 11:44 am
Replies: 5
by fabien tell » Mon Aug 27, 2018 5:29 am

5 Replies

38997 Views

Last post by fabien tell
Tue Aug 28, 2018 11:44 am
area() function -- stylized method -- 3d-method

Last post by ngreiner « Tue Aug 28, 2018 4:00 am
Replies: 4
by ngreiner » Mon Aug 27, 2018 5:58 pm

4 Replies

38114 Views

Last post by ngreiner
Tue Aug 28, 2018 4:00 am
Changing diameters of reconstructed neurons

Last post by ted « Tue Jul 31, 2018 10:47 am
Replies: 5
by Tuoma » Mon Jul 30, 2018 3:47 am

5 Replies

38135 Views

Last post by ted
Tue Jul 31, 2018 10:47 am
Use import3D_swc_read to read the morphology from swc file

Last post by ted « Thu Jul 19, 2018 7:44 am
Replies: 2
by zyc » Thu Jul 19, 2018 2:55 am

2 Replies

36612 Views

Last post by ted
Thu Jul 19, 2018 7:44 am
Utilizing morphology from IMARIS: help classifying "filaments" as basal/apical dendrites, etc

Last post by ted « Wed Jul 18, 2018 3:58 pm
Replies: 6
by sbrich » Tue Jul 17, 2018 12:46 pm

6 Replies

38602 Views

Last post by ted
Wed Jul 18, 2018 3:58 pm

New Topic

212 topics

Return to Board Index

Forum permissions

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum