Anatomically detailed models

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Importing SWC files and best practices

Last post by ted « Sun Sep 08, 2024 1:21 pm
Replies: 3
by JBall » Thu Sep 05, 2024 6:20 pm

3 Replies

187 Views

Last post by ted
Sun Sep 08, 2024 1:21 pm
Interpreting the results of electrotonic analysis

Last post by bril27 « Wed Sep 27, 2023 9:03 pm
Replies: 6
by bril27 » Tue Sep 26, 2023 4:14 am

6 Replies

56094 Views

Last post by bril27
Wed Sep 27, 2023 9:03 pm
Voltage gradient and color scale in anatomically detailed model in Python

Last post by ramcdougal « Sun Sep 03, 2023 4:36 pm
Replies: 1
by bril27 » Thu Aug 24, 2023 7:12 am

1 Replies

22712 Views

Last post by ramcdougal
Sun Sep 03, 2023 4:36 pm
Setting RMP according to experimental measurements.

Last post by ted « Mon Jul 24, 2023 11:01 am
Replies: 5
by alexandrapierri » Thu Jul 20, 2023 7:48 pm

5 Replies

24361 Views

Last post by ted
Mon Jul 24, 2023 11:01 am
All or none action potentials?

Last post by ted « Sun May 14, 2023 11:42 am
Replies: 1
by alexandrapierri » Wed May 10, 2023 11:49 pm

1 Replies

16168 Views

Last post by ted
Sun May 14, 2023 11:42 am
Compartments vs Segments vs Sections

Last post by ted « Wed May 03, 2023 12:20 pm
Replies: 8
by jdlawson » Fri Apr 21, 2023 1:16 pm

8 Replies

19868 Views

Last post by ted
Wed May 03, 2023 12:20 pm
Extracellular Fields

Last post by tonyclick « Wed Apr 12, 2023 10:28 pm
Replies: 30
by Sherif » Thu Oct 13, 2005 5:14 pm
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30 Replies

95990 Views

Last post by tonyclick
Wed Apr 12, 2023 10:28 pm
Segmentation violation error in swc

Last post by alexandrapierri « Mon Mar 20, 2023 10:33 pm
Replies: 4
by alexandrapierri » Fri Mar 17, 2023 3:15 pm

4 Replies

16791 Views

Last post by alexandrapierri
Mon Mar 20, 2023 10:33 pm
cells don't fire without axon

Last post by ted « Sun Feb 26, 2023 11:06 am
Replies: 1
by alexandrapierri » Fri Feb 24, 2023 9:17 pm

1 Replies

11086 Views

Last post by ted
Sun Feb 26, 2023 11:06 am
EOF in fscan

Last post by alexandrapierri « Fri Feb 24, 2023 9:08 pm
Replies: 2
by alexandrapierri » Mon Feb 20, 2023 5:54 pm

2 Replies

11025 Views

Last post by alexandrapierri
Fri Feb 24, 2023 9:08 pm
SWC file content

Last post by ted « Thu Jan 05, 2023 12:23 pm
Replies: 6
by alexandrapierri » Mon Jan 02, 2023 5:24 pm

6 Replies

13963 Views

Last post by ted
Thu Jan 05, 2023 12:23 pm
Uploading .swc file through .hoc

Last post by ted « Mon Apr 25, 2022 11:46 am
Replies: 3
by neuron121! » Sat Apr 02, 2022 2:13 pm

3 Replies

13901 Views

Last post by ted
Mon Apr 25, 2022 11:46 am
File browser dialog missing in Import3D

Last post by hines « Mon Oct 11, 2021 10:49 am
Replies: 26
by bsuter » Mon Sep 27, 2010 10:53 am
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2
26 Replies

52868 Views

Last post by hines
Mon Oct 11, 2021 10:49 am
Importing Imaris files using import 3D tool

Last post by ted « Tue Sep 21, 2021 5:25 pm
Replies: 3
by mehaj » Mon Sep 13, 2021 2:58 am

3 Replies

14322 Views

Last post by ted
Tue Sep 21, 2021 5:25 pm
Error in loading morphology from swc file

Last post by ted « Sat Sep 18, 2021 1:02 am
Replies: 4
by Feanor » Fri Sep 17, 2021 11:04 am

4 Replies

14384 Views

Last post by ted
Sat Sep 18, 2021 1:02 am
cable model with manual diameters and dynamics

Last post by ted « Fri Sep 17, 2021 9:59 am
Replies: 1
by shirin » Fri Sep 17, 2021 3:32 am

1 Replies

12807 Views

Last post by ted
Fri Sep 17, 2021 9:59 am
Import3d tool via Jupyter

Last post by landoskape « Fri Aug 27, 2021 6:49 pm
Replies: 2
by landoskape » Thu Aug 12, 2021 11:37 am

2 Replies

14305 Views

Last post by landoskape
Fri Aug 27, 2021 6:49 pm
Looking for a model illustrating spike frequency adaptation

Last post by careBearStare « Fri Jul 09, 2021 8:23 pm
Replies: 2
by careBearStare » Tue Jul 06, 2021 8:59 pm

2 Replies

13131 Views

Last post by careBearStare
Fri Jul 09, 2021 8:23 pm
NEURON changes dendrite diameter to default value

Last post by schmidla « Fri Mar 05, 2021 3:22 am
Replies: 4
by schmidla » Tue Mar 02, 2021 11:54 am

4 Replies

14289 Views

Last post by schmidla
Fri Mar 05, 2021 3:22 am
Loading a morphology as a hoc file

Last post by ted « Wed Mar 03, 2021 2:53 pm
Replies: 9
by sohaib786 » Thu Feb 25, 2021 9:02 am

9 Replies

17207 Views

Last post by ted
Wed Mar 03, 2021 2:53 pm
The effect of changed dt and steps_per_ms

Last post by ted « Tue Jan 19, 2021 11:08 am
Replies: 3
by Christine Chung » Wed Jan 13, 2021 2:45 am

3 Replies

13536 Views

Last post by ted
Tue Jan 19, 2021 11:08 am
Questions about geometry & area(x)

Last post by ted « Thu Sep 10, 2020 12:29 am
Replies: 3
by agmccrei » Fri Sep 11, 2015 2:44 am

3 Replies

21183 Views

Last post by ted
Thu Sep 10, 2020 12:29 am
morphology altered when Import3d exports to CellBuilder

Last post by DavidSwygart « Mon May 11, 2020 10:45 pm
Replies: 4
by DavidSwygart » Mon Apr 27, 2020 12:13 am

4 Replies

14820 Views

Last post by DavidSwygart
Mon May 11, 2020 10:45 pm
importing .asc (Neurolucida ASCII) files with Python

Last post by ted « Fri Apr 24, 2020 10:41 am
Replies: 4
by hjunji21 » Tue Jun 05, 2018 5:29 pm

4 Replies

20707 Views

Last post by ted
Fri Apr 24, 2020 10:41 am
Neuron transforms soma that is loaded from .swc. What is the rule for it?

Last post by vogdb « Fri Feb 21, 2020 7:12 am
Replies: 4
by vogdb » Mon Feb 10, 2020 6:58 am

4 Replies

16166 Views

Last post by vogdb
Fri Feb 21, 2020 7:12 am
altering length and diameter over a subset

Last post by ted « Sun Dec 22, 2019 9:36 pm
Replies: 1
by fabien tell » Fri Dec 20, 2019 9:41 am

1 Replies

12949 Views

Last post by ted
Sun Dec 22, 2019 9:36 pm
Is there any way to bifurcate axon?

Last post by ted « Wed Dec 18, 2019 9:10 pm
Replies: 3
by Christine Chung » Tue Dec 17, 2019 12:02 am

3 Replies

15575 Views

Last post by ted
Wed Dec 18, 2019 9:10 pm
Precise 3D morphology

Last post by ted « Thu Dec 12, 2019 10:49 am
Replies: 6
by ziemek » Tue Dec 10, 2019 2:41 pm

6 Replies

16825 Views

Last post by ted
Thu Dec 12, 2019 10:49 am
measurments of area by section

Last post by fabien tell « Mon Nov 18, 2019 7:22 am
Replies: 2
by fabien tell » Fri Nov 15, 2019 8:55 am

2 Replies

13615 Views

Last post by fabien tell
Mon Nov 18, 2019 7:22 am
3D rotation in Cell Builder

Last post by ted « Wed Oct 09, 2019 10:29 am
Replies: 3
by DavidSwygart » Fri Oct 04, 2019 5:37 pm

3 Replies

15177 Views

Last post by ted
Wed Oct 09, 2019 10:29 am
Export to .hoc with CellBuilder from Python

Last post by vogdb « Wed Sep 11, 2019 12:07 pm
Replies: 2
by vogdb » Tue Sep 10, 2019 12:32 pm

2 Replies

12999 Views

Last post by vogdb
Wed Sep 11, 2019 12:07 pm
Save model's biophysics and morphology programmatically to .hoc

Last post by vogdb « Wed Sep 04, 2019 6:42 am
Replies: 3
by vogdb » Tue Sep 03, 2019 11:25 am

3 Replies

12985 Views

Last post by vogdb
Wed Sep 04, 2019 6:42 am
How does 'Z. F. Mainen and T. J. Sejnowski (1996)' model work?

Last post by Christine Chung « Fri Aug 09, 2019 1:48 am
Replies: 2
by Christine Chung » Thu Aug 08, 2019 7:51 am

2 Replies

14237 Views

Last post by Christine Chung
Fri Aug 09, 2019 1:48 am
Neurolucida to NEURON best practices?

Last post by hines « Tue Jul 16, 2019 8:34 pm
Replies: 26
by bsuter » Fri Oct 29, 2010 2:36 am
1

2
26 Replies

59864 Views

Last post by hines
Tue Jul 16, 2019 8:34 pm
Morphology import error

Last post by ted « Mon Jul 15, 2019 3:30 pm
Replies: 4
by shyam_u2 » Tue Jul 02, 2019 10:07 am

4 Replies

14697 Views

Last post by ted
Mon Jul 15, 2019 3:30 pm
Guidance on plotting cell's geometry in Python?

Last post by JustasB « Wed Jun 12, 2019 8:43 pm
Replies: 4
by dgalt » Fri May 20, 2016 12:02 pm

4 Replies

21482 Views

Last post by JustasB
Wed Jun 12, 2019 8:43 pm
converting hoc to swc

Last post by ted « Sun Jun 09, 2019 8:50 am
Replies: 7
by mflynn » Thu Feb 08, 2007 7:00 pm

7 Replies

23530 Views

Last post by ted
Sun Jun 09, 2019 8:50 am
Recreating JUST the morphology from an available model (that is coded in an unfamiliar way)

Last post by sbrich « Tue May 07, 2019 4:21 pm
Replies: 3
by sbrich » Fri May 03, 2019 10:46 am

3 Replies

14785 Views

Last post by sbrich
Tue May 07, 2019 4:21 pm
Confusion regarding get_loc and h.cas

Last post by ted « Fri Mar 15, 2019 11:35 am
Replies: 11
by sbrich » Thu Mar 07, 2019 3:03 pm

11 Replies

21749 Views

Last post by ted
Fri Mar 15, 2019 11:35 am
BioPhysical properties of imported morphology in Python

Last post by ted « Tue Mar 12, 2019 10:57 am
Replies: 9
by sohaib786 » Tue Mar 05, 2019 9:16 am

9 Replies

16701 Views

Last post by ted
Tue Mar 12, 2019 10:57 am
Placing a point process at a known 3D location

Last post by ted « Tue Dec 18, 2018 6:39 pm
Replies: 3
by DavidSwygart » Tue Dec 11, 2018 11:45 am

3 Replies

15351 Views

Last post by ted
Tue Dec 18, 2018 6:39 pm
Using Impedance Class for model with Ca accumulation

Last post by Darshan « Thu Sep 27, 2018 10:52 am
Replies: 8
by Darshan » Sat Sep 22, 2018 8:44 am

8 Replies

20137 Views

Last post by Darshan
Thu Sep 27, 2018 10:52 am
GUID keyword error when importing .asc

Last post by ted « Tue Sep 18, 2018 2:06 pm
Replies: 3
by aeronlaffere » Fri Aug 31, 2018 12:26 pm

3 Replies

15404 Views

Last post by ted
Tue Sep 18, 2018 2:06 pm
How to calculate calcium concentration in multi-compartment model

Last post by ted « Fri Sep 14, 2018 12:21 pm
Replies: 2
by NorthWang » Sun Sep 02, 2018 7:55 am

2 Replies

14934 Views

Last post by ted
Fri Sep 14, 2018 12:21 pm
how to calculate section area

Last post by fabien tell « Tue Aug 28, 2018 11:44 am
Replies: 5
by fabien tell » Mon Aug 27, 2018 5:29 am

5 Replies

17440 Views

Last post by fabien tell
Tue Aug 28, 2018 11:44 am
area() function -- stylized method -- 3d-method

Last post by ngreiner « Tue Aug 28, 2018 4:00 am
Replies: 4
by ngreiner » Mon Aug 27, 2018 5:58 pm

4 Replies

16876 Views

Last post by ngreiner
Tue Aug 28, 2018 4:00 am
Changing diameters of reconstructed neurons

Last post by ted « Tue Jul 31, 2018 10:47 am
Replies: 5
by Tuoma » Mon Jul 30, 2018 3:47 am

5 Replies

16747 Views

Last post by ted
Tue Jul 31, 2018 10:47 am
Use import3D_swc_read to read the morphology from swc file

Last post by ted « Thu Jul 19, 2018 7:44 am
Replies: 2
by zyc » Thu Jul 19, 2018 2:55 am

2 Replies

17246 Views

Last post by ted
Thu Jul 19, 2018 7:44 am
Utilizing morphology from IMARIS: help classifying "filaments" as basal/apical dendrites, etc

Last post by ted « Wed Jul 18, 2018 3:58 pm
Replies: 6
by sbrich » Tue Jul 17, 2018 12:46 pm

6 Replies

16606 Views

Last post by ted
Wed Jul 18, 2018 3:58 pm
Making whole cells out of Mcintyre myelinated axon model (2002) and testing short and long-term plasticity between them

Last post by moeskiski « Tue Jul 17, 2018 12:17 pm
Replies: 15
by moeskiski » Mon Jun 11, 2018 6:34 am
1

2
15 Replies

36331 Views

Last post by moeskiski
Tue Jul 17, 2018 12:17 pm

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