Search found 6300 matches
- Tue Apr 04, 2006 7:59 pm
- Forum: Adding new mechanisms and functions to NEURON
- Topic: Nsingle
- Replies: 14
- Views: 12683
I'm glad you posted that code. These are good questions: Now the proc setrates() is called on every time step. However, I wonder what is the impact of this on the calculation speed. Is this similar to the NMODL mechanisms where the rates are usually called on every timestep? Similar in effect. (unle...
- Tue Apr 04, 2006 12:23 am
- Forum: Getting started
- Topic: How to move neuron in space without changing its dimensions
- Replies: 5
- Views: 7494
Rotating and zooming on a shape plot
Apart from moving a reconstructed cell is there an easy way to rotate it in 3D space? You can view it from different angles. See http://www.neuron.yale.edu/neuron/static/courses/2008/course/zclass/shape.htm which is from this tutorial on how to analyze the electrotonic properties of a cell http://w...
- Mon Apr 03, 2006 2:54 pm
- Forum: Other questions
- Topic: removing .lib files
- Replies: 3
- Views: 4971
- Mon Apr 03, 2006 1:50 pm
- Forum: Other questions
- Topic: removing .lib files
- Replies: 3
- Views: 4971
Re: removing .lib files
Very strange.
from source code? Under Linux, rm -rf i686 should remove i686 and any subdirs.
Sounds like you're using Linux--why do you have i686 folders? Are you compiling NEURONI am using Windows.
from source code? Under Linux, rm -rf i686 should remove i686 and any subdirs.
- Fri Mar 31, 2006 10:55 am
- Forum: Anatomically detailed models
- Topic: To save the neuron with new morphology in a .hoc file
- Replies: 2
- Views: 5240
- Fri Mar 31, 2006 10:42 am
- Forum: Other questions
- Topic: Local object references
- Replies: 9
- Views: 10064
Re: define a new class to hide an objref in a proc or func
??eacheon wrote:Why did this get removed in NEURON 5.8?
It works in 5.8. Have you encountered an instance in which it doesn't?
- Fri Mar 31, 2006 10:36 am
- Forum: Other questions
- Topic: return a strdef?
- Replies: 1
- Views: 3095
Use the standard run system's String class
You have stumbled upon something that is an accident of history. In NEURON's early incarnations, hoc had scalars, doubles (arrays), sections, and strdefs (strings). Object-oriented programming was added later, and with it came objrefs. Consequently doubles, sections, and strdefs "aren't quite o...
- Thu Mar 30, 2006 5:39 pm
- Forum: Optimization
- Topic: MultupleRunFitter[0]Generators output differs from sims
- Replies: 2
- Views: 6278
Re: MultupleRunFitter[0]Generators output differs from sims
when I try to run the same simulation outside the runFitter I get quite a different response Then the assumption that you have "run the same simulation" is false, i.e. an instance of mismatch between what's in your head and what's in the computer. Such mismatches are often cases of the &q...
- Thu Mar 30, 2006 5:27 pm
- Forum: Anatomically detailed models
- Topic: dendrograms
- Replies: 10
- Views: 12666
- Thu Mar 30, 2006 10:35 am
- Forum: Anatomically detailed models
- Topic: dendrograms
- Replies: 10
- Views: 12666
- Wed Mar 29, 2006 11:55 pm
- Forum: Suggestions and Feedback
- Topic: Possible Workshop for 2006 Meeting
- Replies: 1
- Views: 18469
You're raising a provocative question. I'm surprised--or maybe not surprised--that this hasn't yet received comments. Model reduction is a very broad topic. One could say that a form of model reduction happens every time someone cooks up a conceptual model that can be mapped into a computational mod...
- Wed Mar 29, 2006 11:59 am
- Forum: Getting started
- Topic: Stochastic single channel simulator??
- Replies: 1
- Views: 3221
Use a different random number seed for each instance and/or simulation run. See http://www.neuron.yale.edu/neuron/static/docs/help/neuron/general/classes/random.html A reasonable strategy is to create a set of seeds in advance. For the sake of reproducibility, you may also want to record a log file ...
- Wed Mar 29, 2006 11:50 am
- Forum: Suggestions and Feedback
- Topic: NEURON Wiki?
- Replies: 7
- Views: 37285
Re: NEURON Wiki!
I think there should be one central repository for NEURON knowlegde. Depends on the meaning of "one central repository." One thing it should not mean: stuffing everything into a wiki. wiki has obvious strengths for certain kinds of documentation, but it also has undeniable weaknesses that...
- Tue Mar 28, 2006 10:33 am
- Forum: Other ways of using NEURON in neuroscience education
- Topic: a question...
- Replies: 5
- Views: 64300
- Mon Mar 27, 2006 4:35 pm
- Forum: Other ways of using NEURON in neuroscience education
- Topic: a question...
- Replies: 5
- Views: 64300
Google for definitions/discussions of (un)common terms
Google finds 627 hits. At least a dozen of those should explain it fairly well. The first page
of Google's hits even includes one on this forum. There might also be something on
Wikipedia, but I didn't bother to check.
of Google's hits even includes one on this forum. There might also be something on
Wikipedia, but I didn't bother to check.