Search found 36 matches

by maria.kesa
Mon Dec 28, 2015 11:33 am
Forum: Anatomically detailed models
Topic: Adding a synapse
Replies: 2
Views: 5592

Adding a synapse

Hello, I'm working with this model https://senselab.med.yale.edu/ModelDB/ShowModel.cshtml?model=150288 I'm a beginner. I'm trying to dissect how the model works and run small pieces of it. So far I have this code: load_file("nrngui.hoc") load_file("LAcells_template.hoc") load_file("interneuron_templ...
by maria.kesa
Mon Dec 28, 2015 9:23 am
Forum: Other questions
Topic: Notation
Replies: 2
Views: 1227

Notation

Hello,

What does the $o1 mean in the following code? I know that $1 means the first variable of the function, but what does $o1 mean?

Code: Select all

proc init() {
	
		netstimA = $o1
}
Thanks!

Maria
by maria.kesa
Sun Dec 27, 2015 2:40 pm
Forum: Getting started
Topic: amp
Replies: 2
Views: 5494

amp

Hello,

When I do

Code: Select all

objectvar stim
soma stim = new IClamp(0.5)

stim.del = 100
stim.dur = 100
stim.amp = 0.1
according to the NEURON tutorial, what are the units of the stim.amp? Thanks.
by maria.kesa
Tue Dec 01, 2015 9:10 am
Forum: Anatomically detailed models
Topic: making a template from a neuromorpho morphology
Replies: 5
Views: 7649

Re: making a template from a neuromorpho morphology

Thank you, Ted! My question is-- do you need the axons in the cell morphologies when you build a network? Can I make it work through NetCon that whenever a presynaptic cell spikes the synapses of the post-synaptic cell that I define receive the information? That way I don't have to model how the act...
by maria.kesa
Mon Nov 30, 2015 12:24 pm
Forum: Anatomically detailed models
Topic: making a template from a neuromorpho morphology
Replies: 5
Views: 7649

Re: making a template from a neuromorpho morphology

Thank you, Ted! That's very useful. I went through a NEURON tutorial on making NMODL files http://www.anc.ed.ac.uk/school/neuron/tutorial/tutD.html How can I use the specification for custom ion channels in cell builder? For example, if I want to insert an AMPA channel of this kind https://senselab....
by maria.kesa
Sun Nov 29, 2015 1:18 pm
Forum: Anatomically detailed models
Topic: making a template from a neuromorpho morphology
Replies: 5
Views: 7649

making a template from a neuromorpho morphology

Hello, My name is Maria and I'm learning Neuron for my master's thesis. I would like to create a simulation with real neuron morphologies from neuromorpho.org that are connected in a network. I read some forum posts on this topic. I downloaded a cell morphology from neuromorpho and opened it with im...