Search found 22 matches

by maxwellphenderson
Tue Nov 01, 2011 1:32 pm
Forum: NEURON + Python
Topic: import3D question
Replies: 1
Views: 1513

import3D question

Hi, I am trying to use NEURON/Python to create a neural network with detailed morphology, and I have several swc files that I wanted to import. I was originally reading over import3D assuming it was also available for use inside a script; is that the case? Or is import3D only a GUI thing at this poi...
by maxwellphenderson
Fri Apr 15, 2011 10:05 pm
Forum: NEURON + Python
Topic: Installation on Linux troubles
Replies: 2
Views: 3174

Re: Installation on Linux troubles

Thanks for the help! Finally got everything installed and working properly. :)
by maxwellphenderson
Wed Apr 13, 2011 4:24 pm
Forum: NEURON + Python
Topic: Installation on Linux troubles
Replies: 2
Views: 3174

Installation on Linux troubles

I am using Andrew Davison's notes for installation for Linux. So, I downloaded the newest source files, and began running through the instructions. I ran the commands: $ N=`pwd` $ tar xzf iv-17.tar.gz $ tar xzf nrn-nn.tar.gz $ cd iv-17 $ ./configure --prefix=`pwd` This gives me the output: hendemd@l...
by maxwellphenderson
Wed Mar 09, 2011 1:55 pm
Forum: NEURON + Python
Topic: Trouble with make command
Replies: 3
Views: 3073

Re: Trouble with make command

Oh ok, thank you! If I could pester you with an additional question.... I have MATLAB on my computer, and whenever I run MATLAB, X11 automatically boots up and runs. I copied the same X11 folder into my iv-17 folder in my neuron directory. But, when I run: ./configure --prefix=$DIR/iv --enable-X11 i...
by maxwellphenderson
Wed Mar 09, 2011 2:17 am
Forum: NEURON + Python
Topic: Trouble with make command
Replies: 3
Views: 3073

Trouble with make command

Currently, I am trying to install NEURON using python as an interpreter. I have successfully installed OS X Developer Tools for my Mac and have been going through the steps for installing from source using both: http://www.davison.webfactional.com/notes/installation-neuron-python/ and http://www.neu...
by maxwellphenderson
Mon Mar 07, 2011 3:49 pm
Forum: NEURON + Python
Topic: Question about using python as interpreter
Replies: 3
Views: 2218

Question about using python as interpreter

So, I am new to NEURON and have been excitedly playing with the tools outlined in some of the various NEURON tutorials. I have run into an issue though that I am having a bit of trouble with. I would like to use python as an interpreter instead of hoc. I found a tutorial about how to do this using b...